Hi Jose,
mri_extract_label should do the trick if you give the output volume the .nii extension. THey will be in native space. Use aparc+aseg.mgz as input if you want cortical regions in the volume (although of course you lose resolution)
cheers, Bruce
On Thu, 28 May 2009, Jose Luis Cantero Lorente wrote:
Dear Freesurfers,
Is it possible to export to nii format specific regions previously
segmented with FS? If yes, how should I proceed with this task in the case of cortical and subcortical regions? Are they exported in the MNI space, Talairach,...?
Thanks in advance.
Best regards, Jose
Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cellular Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla
- Spain -
Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcanlor@upo.es http://www.upo.es/neuroaging/es/
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