Dear Martin

Thanks a lot for your comment

Cheers Jürgen

On [DATE], "Martin Reuter" <[ADDRESS]> wrote:

Hi Jürgen,

I have never tested these flags in the long stream. It should not

hurt

to pass them in the base and in the long. In the long, the talairach from

the base is used anyway, so the -use-mritotal should have no effect

there, but

the -nuintens... should.

Best, Martin

On Sat, 2013-01-05 at 08:45 +0100,

Jürgen Hänggi wrote: Dear FS experts

I run the cross sectional step (step 1) for a longitudinal analysis with the following options:

recon-all -s $s -all -talairach -use-mritotal -nuintensitycor-3T

I would like to know whether I have also use these options in the creation of the base template (step 2) and in the longitudinal runs (step 3).

What is the recommendation when using these special options?

Thanks in advance

Regards Jürgen Hänggi

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Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology

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---------------------------------------------------------------------------- Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)

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