Hi Jürgen,
I have never tested these flags in the long stream. It should not hurt to pass them in the base and in the long. In the long, the talairach from the base is used anyway, so the -use-mritotal should have no effect there, but the -nuintens... should.
Best, Martin
On Sat, 2013-01-05 at 08:45 +0100, Jürgen Hänggi wrote:
Dear FS experts
I run the cross sectional step (step 1) for a longitudinal analysis with the following options:
recon-all -s $s -all -talairach -use-mritotal -nuintensitycor-3T
I would like to know whether I have also use these options in the creation of the base template (step 2) and in the longitudinal runs (step 3).
What is the recommendation when using these special options?
Thanks in advance Regards Jürgen Hänggi
Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
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