glad it was something easy :) On Mon, 13 Feb 2017, Gronenschild Ed (NP) wrote:

Hi Bruce, All output generated is redirected to a temporary log file by me. Fortunately, it is still available and when I look at it I see what happened: it doesn’t find Matlab runtime in the FreeSurferv6 directory. I’m sorry about this, I just have to copy the MCRv80 from FreeSurferv6b to v6 and it will do the hippocampal subfields segmentation.

Cheers, Ed

On 13 Feb 2017, at 18:00, freesurfer-request@nmr.mgh.harvard.edu wrote:

  Hi Ed

  was there any error message or anything? It just seems to end
  normally 
  but then gives a nonzero exit code causing recon-all to stop?

  cheers
  Bruce
  On Mon, 13 Feb 
  2017, Gronenschild Ed (NP) wrote:

        Hi,

        All datasets that I've processed sofar with v6
        resulted in exactly the same error during running
        the command:

        mris_anatomical_stats -th3 -mgz -f
        ../stats/rh.BA_exvivo.thresh.stats -b -a
        ./rh.BA_exvivo.thresh.annot -c
        ./BA_exvivo.thresh.ctab 001 rh white

        I'm on a MacPro OSX10.7 with 32 GB RAM.
        These are 7T high-res data (0.7 mm isotropic voxel
        size) and were previously processed successfully
        with v6b.
        The log file is attached.

        Cheers,
        Ed