Hi Bruce,
All output generated is redirected to a temporary log file by me. Fortunately, it is still available and when I look at it I see what happened: it doesn’t find Matlab runtime in the FreeSurferv6 directory. I’m sorry about this, I just have to copy the MCRv80 from FreeSurferv6b to v6 and it will do the hippocampal subfields segmentation.
Cheers, Ed
On 13 Feb 2017, at 18:00, freesurfer-request@nmr.mgh.harvard.edumailto:freesurfer-request@nmr.mgh.harvard.edu wrote:
Hi Ed
was there any error message or anything? It just seems to end normally but then gives a nonzero exit code causing recon-all to stop?
cheers Bruce On Mon, 13 Feb 2017, Gronenschild Ed (NP) wrote:
Hi,
All datasets that I've processed sofar with v6 resulted in exactly the same error during running the command:
mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab 001 rh white
I'm on a MacPro OSX10.7 with 32 GB RAM. These are 7T high-res data (0.7 mm isotropic voxel size) and were previously processed successfully with v6b. The log file is attached.
Cheers, Ed