Hi all,
I have several subjects whose cortical grey matter continues to not be included in the pial surface even after adding numerous control points to the white matter as suggested in https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2007-July/005649.html . Some of the control points I added were outside of the pial surface boundary--does this cause them to be ignored? I have white matter areas with multiple control points that are still not included in either the pial or white matter boundaries.
I can supply images if it would be helpful.
Thanks for any help!
Andrew
You shouldn't ever add any that are not in white matter. Feel free to upload the subject and we will take a look
On Apr 18, 2011, at 7:35 PM, andrewmains12@berkeley.edu wrote:
Hi all,
I have several subjects whose cortical grey matter continues to not be included in the pial surface even after adding numerous control points to the white matter as suggested in https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2007-July/005649.html . Some of the control points I added were outside of the pial surface boundary--does this cause them to be ignored? I have white matter areas with multiple control points that are still not included in either the pial or white matter boundaries.
I can supply images if it would be helpful.
Thanks for any help!
Andrew
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Bruce Fischl