Hello Maura,

Here at the Center we stopeed active development of the stable6 branch and focused all our development on the dev version. A new stable6 will be cut soon from dev soon, but in the meantime I have linked the two together (stable6=dev). So feel free to resubmit your job, as the bug you encountered has been fixed in the dev branch. You dont need to change anything on your end.

-Zeke

On 12/16/2015 02:47 PM, Hamel, Maura K. wrote:

Hi Freesurfer experts,

I’m looking for some help with some recons I tried running yesterday for about 60 subjects.

The command I submitted was: recon-all -i /autofs/cluster/maury/users/gcoombs/College_Risk/SUBJECTS_DIR_FS53/${subject}/MPRAGE/0*/001.mgz -s ${subject} -all

I have attached the log files, and I’m hoping you can explain the error I received and what I need to do fix it. Thanks in advance for your help!

FREESURFER_HOME: /usr/local/freesurfer/stable6

Build stamp: freesurfer-Linux-centos6_x86_64-stable-v6-beta-20151208

RedHat release: CentOS release 6.7 (Final)

Kernel info: Linux 4.1.8-1.el6.elrepo.x86_64 x86_64

NMR Center info (/space/freesurfer exists):

machine: tyra

SUBJECTS_DIR: /autofs/cluster/maury/users/gcoombs/College_Risk/SUBJECTS_DIR_FS60

PWD: /autofs/cluster/maury/users/gcoombs/College_Risk

ssh tyra setenv SUBJECTS_DIR /autofs/cluster/maury/users/gcoombs/College_Risk/SUBJECTS_DIR_FS60 cd /autofs/cluster/maury/users/gcoombs/College_Risk

Best,

*Maura Hamel* Clinical Research Coordinator Psychiatric Neuroimaging Research Program Martinos Center for Biomedical Imaging Massachusetts General Hospital 149 13th St, Room 2602A Charlestown, MA 02129 Phone: 617-643-4441 Fax: 617-726-4078

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