Hi Freesurfer experts,
I’m looking for some help with some recons I tried running yesterday for about 60 subjects.
The command I submitted was: recon-all -i /autofs/cluster/maury/users/gcoombs/College_Risk/SUBJECTS_DIR_FS53/${subject}/MPRAGE/0*/001.mgz -s ${subject} -all
I have attached the log files, and I’m hoping you can explain the error I received and what I need to do fix it. Thanks in advance for your help!
FREESURFER_HOME: /usr/local/freesurfer/stable6
Build stamp: freesurfer-Linux-centos6_x86_64-stable-v6-beta-20151208
RedHat release: CentOS release 6.7 (Final)
Kernel info: Linux 4.1.8-1.el6.elrepo.x86_64 x86_64
NMR Center info (/space/freesurfer exists):
machine: tyra
SUBJECTS_DIR: /autofs/cluster/maury/users/gcoombs/College_Risk/SUBJECTS_DIR_FS60
PWD: /autofs/cluster/maury/users/gcoombs/College_Risk
ssh tyra setenv SUBJECTS_DIR /autofs/cluster/maury/users/gcoombs/College_Risk/SUBJECTS_DIR_FS60 cd /autofs/cluster/maury/users/gcoombs/College_Risk
Best,
Maura Hamel Clinical Research Coordinator Psychiatric Neuroimaging Research Program Martinos Center for Biomedical Imaging Massachusetts General Hospital 149 13th St, Room 2602A Charlestown, MA 02129 Phone: 617-643-4441 Fax: 617-726-4078