Sorry, there was a bug in that version. I've put an updated version on that ftp site doug

On 08/21/2012 03:49 PM, Blazey, Tyler wrote:

Hi,

I recently installed the updated mri_segstats (ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats.linux). This seems to work fine for recalculating the supratentorial volume. However, it is causing my new recons to fail (see example error below). Any suggestions?

Thanks,

-Tyler

$Id: mri_segstats.c,v 1.86 2012/07/16 14:39:07 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.24644/ones.mgz --i ./tmp.mri_nu_correct.mni.24644/nu2.mnc --sum ./tmp.mri_nu_correct.mni.24644/sum.junk --avgwf ./tmp.mri_nu_correct.mni.24644/output.mean.dat sysname Linux hostname login001 machine x86_64 user tblazey UseRobust 0 Loading ./tmp.mri_nu_correct.mni.24644/ones.mgz Loading ./tmp.mri_nu_correct.mni.24644/nu2.mnc Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 0 0

Reporting on 0 segmentations Computing spatial average of each frame

Writing to ./tmp.mri_nu_correct.mni.24644/output.mean.dat (standard_in) 1: parse error

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