Hi Karin,

This tutorial will explain how to find your dicom input file: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Practice

Best,

Emma

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Karin Westin karin.westin85@gmail.com Sent: Wednesday, April 11, 2018 9:29:37 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] DICOM input to recon-all

Hi everybody!

I'm very new to freesurfer and I'm trying to perform a reconstruction using recon-all. My problem is I don't see how I can access a single file to input to recon-all. I've run dcmunpack -src <path to mri-file> but the only output I get is

Found 2 unique series: 4 401 Subject (name of subject) Date (date of examination) Time 110000 Institution (place of acqusition) 4 3DBRAVO+Gd 3.344 8.724 13 0.9375 ROW 195.312 ./EE975AF8 401 refSAGBRAVO+gd 3.344 8.724 13 0.46875 unknown 195.312 ./EEF3A407 mailto:freesurfer@nmr.mgh.harvard.edu

How do I access the actual files of these series?

Best, Karin