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Thanks for the interest in our work, Anton! We don’t have a template in MNI space, sorry (it’s on the to-do list, but buried among many other items). But you can always segment the template with the atlas 😃 Cheers, /Eugenio

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From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Dr. Anton Jakovcic jakovcic@cbs.mpg.de Date: Wednesday, September 6, 2023 at 10:10 AM To: freesurfer freesurfer@nmr.mgh.harvard.edu Cc: Seyma Bayrak bayrak@cbs.mpg.de Subject: [Freesurfer] FreeSurfer hippo-amygala module External Email - Use Caution

Dear all,

here is Anton - a PhD candidate from Max Planck Institute for Human Cognitive and Brain Research in Leipzig, Germany.

Using FreeSurfer module segment_subregions, I successfully segmented amygdala for individual HCP subjects. Thanks a lot for developing it!

Currently, I am trying to get a group-level or a MNI-level segmentation to build a representative figure. Do you think, is it possible to segment amygdala in MNI-registration template? Any help/suggestion is appreciated.

Kind regards Anton Jakovcic

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