Hi
I have a series of T1 images that I have transformed in Freesurfer to .nii.gz images in talairach space with mri_convert -at transforms/talairach.xfm. I am using the skull-stripped image brain.mgz produced by recon-all.
When I view them in freeview they look well-registered, and similarly when I view them in MRIcron. However, if I use FSLeyes they seem to have a different origin for each subject, and fslmerge complains that they have Inconsistent orientations.
Is there any inconsistency that you know of between freeview and FSLeyes?
Helen Beaumont PhD
I've never used FSLeyes so I can't say
On 01/23/2018 01:05 PM, Helen Beaumont wrote:
Hi
I have a series of T1 images that I have transformed in Freesurfer to .nii.gz images in talairach space with mri_convert -at transforms/talairach.xfm. I am using the skull-stripped image brain.mgz produced by recon-all.
When I view them in freeview they look well-registered, and similarly when I view them in MRIcron. However, if I use FSLeyes they seem to have a different origin for each subject, and fslmerge complains that they have Inconsistent orientations.
Is there any inconsistency that you know of between freeview and FSLeyes?
Helen Beaumont PhD
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
Helen Beaumont