23 Jan
2018
23 Jan
'18
1:05 p.m.
Hi
I have a series of T1 images that I have transformed in Freesurfer to .nii.gz images in talairach space with mri_convert -at transforms/talairach.xfm. I am using the skull-stripped image brain.mgz produced by recon-all.
When I view them in freeview they look well-registered, and similarly when I view them in MRIcron. However, if I use FSLeyes they seem to have a different origin for each subject, and fslmerge complains that they have Inconsistent orientations.
Is there any inconsistency that you know of between freeview and FSLeyes?
Helen Beaumont PhD