Thanks Zeke.

To my knowledge tcsh v6.17.06 is the latest version of tcsh for Ubuntu 12.04 LTS, but I just discovered tcsh v6.18.01 is available for more recent versions of Ubuntu (e.g. Ubuntu 12.10, 13.04). If you (or anyone else) knows of any issues with tcsh v6.18.01 please let me know, otherwise I'll update to that version.

Andrew

On Thu, May 30, 2013 at 10:51 AM, Z K zkaufman@nmr.mgh.harvard.edu wrote:

Hi Andrew,

It is expected that you would not see this warning with Freesurfer version 5.1.

Its just a warning, but tcsh v6.17.06 on Ubuntu always returns exit code 0. This can be problematic for instances where recon-all encounters and error and should fail. If you ran recon-all and have all the expected files than you should be all set.

I believe you can use the Ubuntu Update Manager tool to install the latest version tcsh.

-Zeke

On 05/30/2013 01:19 PM, Andrew Bock wrote:

...

Hello everyone,

I just updated to Freesurfer 5.3.0, my OS is Ubuntu 12.04. When I run 'recon-all -i <T1 image> -subjid <subject name>' I receive the following error:

WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh!

The directory structure appears to be set up correctly, and the command finishes without error. I do not receive this error when using Freesurfer 5.1.0. I have yet to run 'recon-all -all -subjid <subject name>' in 5.3.0. Any ideas on what produces this error? is it safe to ignore?

Thanks in advance,

Andrew

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