Hi Freesurferteam,
For some of my subjects I get an error when I try to perform my analyses, because the mcprextreg file is missing.
It is not apparent to my why this file is missing for some of my subjects, while it is there for all the other subjects.
Also, there is one subject for which the file is missing in one out of three bold runs. For the other two runs the file was perfectly generated.
Could you please help me solving this issue?
Thank you very much.
Best regards,
Christina
Can you send the log files for those subjects? You will find them in the log folder of the project folder. You will see one for preproc and one for selxavg3
On 11/15/2017 11:04 AM, Christina Pressl wrote:
/Hi Freesurferteam, / /For some of my subjects I get an error when I try to perform my analyses, because the mcprextreg file is missing. / /It is not apparent to my why this file is missing for some of my subjects, while it is there for all the other subjects. / /Also, there is one subject for which the file is missing in one out of three bold runs. For the other two runs the /
/file was perfectly generated./ // /Could you please help me solving this issue?/ // /Thank you very much. / // /Best regards, / /Christina /
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Hi Doug,
Thank you for your quick reply.
Below are the preproc log files for the subjects that have no mprextreg file.
The selxavg3 files are coded differently(separately for left, and right hemisphere and mni305 - I am not sure if that’s the way they should be coded) but I managed to find the corresponding right hemisphere ones and providing those as an example. Please see below and please let me know if you need left hemisphere and mni305 as well.
Thank you very much for your help and time. I very much appreciate it.
Best, Christina
Hi Freesurfer team,
I am wondering if you received my last email which contained the log files you were asking me to send to you.
Please let me know if you would like me to resend,
Thank you very much.
Best, Christina
On 15.11.2017, at 15:22, Christina Pressl <cpressl@rockefeller.edumailto:cpressl@rockefeller.edu> wrote:
Hi Doug,
Thank you for your quick reply.
Below are the preproc log files for the subjects that have no mprextreg file.
The selxavg3 files are coded differently(separately for left, and right hemisphere and mni305 - I am not sure if that’s the way they should be coded) but I managed to find the corresponding right hemisphere ones and providing those as an example. Please see below and please let me know if you need left hemisphere and mni305 as well.
Thank you very much for your help and time. I very much appreciate it.
Best, Christina
<preproc-NC183-sess-1-bold.log> <preproc-NC197-sess-1-bold.log> <preproc-NC199-sess-1-bold.log> <preproc-NC201-sess-1-bold.log> <preproc-NC202-sess-1-bold.log> <preproc-NY612-sess-1-bold.log>
<selxavg3-sess-bold-facelocaliser.sm5.rh-171015195935.log> <selxavg3-sess-bold-facelocaliser.sm5.rh-171015200020.log> <selxavg3-sess-bold-facelocaliser.sm5.rh-171015200104.log> <selxavg3-sess-bold-facelocaliser.sm5.rh-171015201050.log> <selxavg3-sess-bold-facelocaliser.sm5.rh-171015200147.log> <selxavg3-sess-bold-facelocaliser.sm5.rh-171011110550.log>
On Nov 15, 2017, at 2:46 PM, Douglas N Greve <greve@nmr.mgh.harvard.edumailto:greve@nmr.mgh.harvard.edu> wrote:
Can you send the log files for those subjects? You will find them in the log folder of the project folder. You will see one for preproc and one for selxavg3
On 11/15/2017 11:04 AM, Christina Pressl wrote: /Hi Freesurferteam, / /For some of my subjects I get an error when I try to perform my analyses, because the mcprextreg file is missing. / /It is not apparent to my why this file is missing for some of my subjects, while it is there for all the other subjects. / /Also, there is one subject for which the file is missing in one out of three bold runs. For the other two runs the /
/file was perfectly generated./ // /Could you please help me solving this issue?/ // /Thank you very much. / // /Best regards, / /Christina /
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edumailto:greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at https://urldefense.proofpoint.com/v2/url?u=http-3A__www.partners.org_complia... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi experts,
I am not sure if my log files are reaching you. I tried sending them twice by now.
Could you please let me know if I can send files through here?
Thank you very much.
Christina
On Nov 15, 2017, at 2:46 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
Can you send the log files for those subjects? You will find them in the log folder of the project folder. You will see one for preproc and one for selxavg3
On 11/15/2017 11:04 AM, Christina Pressl wrote:
/Hi Freesurferteam, / /For some of my subjects I get an error when I try to perform my analyses, because the mcprextreg file is missing. / /It is not apparent to my why this file is missing for some of my subjects, while it is there for all the other subjects. / /Also, there is one subject for which the file is missing in one out of three bold runs. For the other two runs the /
/file was perfectly generated./ // /Could you please help me solving this issue?/ // /Thank you very much. / // /Best regards, / /Christina /
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.ed...
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://urldefense.proofpoint.com/v2/url?u=https-3A__gate.nmr.mgh.harvard.ed... www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: https://urldefense.proofpoint.com/v2/url?u=ftp-3A__surfer.nmr.mgh.harvard.ed...
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.ed...
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at https://urldefense.proofpoint.com/v2/url?u=http-3A__www.partners.org_complia... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Christina Pressl -
Douglas N Greve