sulci depth in table

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Tara Ann Miskovich

8 Nov 2013 8 Nov '13

11:35 a.m.

Hello,

I am extracting sulci depth using the following

mri_segstats --annot ${subject} lh aparc --sum lh.sulc.sum --i surf/lh.sulc

Do you know how I could put this into aparcstats2table?

Thank you,

Tara

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Douglas N Greve

8 Nov 8 Nov

2 p.m.

If you are using mri_segstats then you should use asegstats2table doug

On 11/08/2013 11:35 AM, Tara Ann Miskovich wrote:

...

Hello,

I am extracting sulci depth using the following

mri_segstats --annot ${subject} lh aparc --sum lh.sulc.sum --i surf/lh.sulc

Do you know how I could put this into aparcstats2table?

Thank you,

Tara

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Tara Ann Miskovich

2:26 p.m.

I see thank you, and what would I use as the measure? Because for asegstats2table I chose between volume and mean correct? Sorry a bit new at this.

Tara

----- Original Message ----- From: "Douglas N Greve" greve@nmr.mgh.harvard.edu To: freesurfer@nmr.mgh.harvard.edu Sent: Friday, November 8, 2013 1:00:18 PM Subject: Re: [Freesurfer] sulci depth in table

If you are using mri_segstats then you should use asegstats2table doug

On 11/08/2013 11:35 AM, Tara Ann Miskovich wrote:

...

Hello,

I am extracting sulci depth using the following

mri_segstats --annot ${subject} lh aparc --sum lh.sulc.sum --i surf/lh.sulc

Do you know how I could put this into aparcstats2table?

Thank you,

Tara

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

Douglas N Greve

2:39 p.m.

use -m mean doug

On 11/08/2013 02:26 PM, Tara Ann Miskovich wrote:

...

I see thank you, and what would I use as the measure? Because for asegstats2table I chose between volume and mean correct? Sorry a bit new at this.

Tara

----- Original Message ----- From: "Douglas N Greve" greve@nmr.mgh.harvard.edu To: freesurfer@nmr.mgh.harvard.edu Sent: Friday, November 8, 2013 1:00:18 PM Subject: Re: [Freesurfer] sulci depth in table

If you are using mri_segstats then you should use asegstats2table doug

On 11/08/2013 11:35 AM, Tara Ann Miskovich wrote:

...
Hello,

I am extracting sulci depth using the following

mri_segstats --annot ${subject} lh aparc --sum lh.sulc.sum --i surf/lh.sulc

Do you know how I could put this into aparcstats2table?

Thank you,

Tara

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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Douglas N Greve
Tara Ann Miskovich