External Email - Use Caution
Hi there,
I am working on a participant that has abnormally large ventricles. This has previously posed an issue with freesurfer by failing with errors but I have been successful this cycle without the job failing. However, after my first round of edits and running recon-all there is a major issue with the WM and Pial boundary area. I am unaware of how to address it. I have attached images to highlight where my concern is. Any insight?
Thank you so much!
Lisa
________________________________
This message may contain confidential information and is for the sole use of the intended recipient(s). If you are not the intended recipient, do not use, distribute, or copy this e-mail. Please notify the UC Irvine Health – Compliance and Privacy Office via email at hacompliance@uci.edu or by phone 888-456-7006 immediately if you have received this e-mail in error. E-mail transmission cannot be guaranteed to be secure or error-free as information could be intercepted, corrupted, lost, destroyed, arrive late or incomplete, or contain viruses. The sender therefore does not accept liability for any errors or omissions in the contents of this message, which arise as a result of e-mail transmission.
Is the ventricle properly segmented in the aseg.presurf.mgz? If not, try running recon-all with -bigventricles
On 11/22/2019 2:21 PM, Taylor, Lisa Marie wrote:
External Email - Use Caution
Hi there,
I am working on a participant that has abnormally large ventricles. This has previously posed an issue with freesurfer by failing with errors but I have been successful this cycle without the job failing. However, after my first round of edits and running recon-all there is a major issue with the WM and Pial boundary area. I am unaware of how to address it. I have attached images to highlight where my concern is. Any insight?
Thank you so much!
Lisa
________________________________
This message may contain confidential information and is for the sole use of the intended recipient(s). If you are not the intended recipient, do not use, distribute, or copy this e-mail. Please notify the UC Irvine Health – Compliance and Privacy Office via email at hacompliance@uci.edumailto:hacompliance@uci.edu or by phone 888-456-7006 immediately if you have received this e-mail in error. E-mail transmission cannot be guaranteed to be secure or error-free as information could be intercepted, corrupted, lost, destroyed, arrive late or incomplete, or contain viruses. The sender therefore does not accept liability for any errors or omissions in the contents of this message, which arise as a result of e-mail transmission.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
This addressed my concern! Thank you for the insight. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Greve, Douglas N.,Ph.D. [DGREVE@mgh.harvard.edu] Sent: Friday, November 22, 2019 2:32 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] How do I fix this white matter boundary issue?
Is the ventricle properly segmented in the aseg.presurf.mgz? If not, try running recon-all with -bigventricles
On 11/22/2019 2:21 PM, Taylor, Lisa Marie wrote:
External Email - Use Caution
Hi there,
I am working on a participant that has abnormally large ventricles. This has previously posed an issue with freesurfer by failing with errors but I have been successful this cycle without the job failing. However, after my first round of edits and running recon-all there is a major issue with the WM and Pial boundary area. I am unaware of how to address it. I have attached images to highlight where my concern is. Any insight?
Thank you so much!
Lisa
________________________________
This message may contain confidential information and is for the sole use of the intended recipient(s). If you are not the intended recipient, do not use, distribute, or copy this e-mail. Please notify the UC Irvine Health – Compliance and Privacy Office via email at hacompliance@uci.edumailto:hacompliance@uci.edu or by phone 888-456-7006 immediately if you have received this e-mail in error. E-mail transmission cannot be guaranteed to be secure or error-free as information could be intercepted, corrupted, lost, destroyed, arrive late or incomplete, or contain viruses. The sender therefore does not accept liability for any errors or omissions in the contents of this message, which arise as a result of e-mail transmission.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://urldefense.com/v3/__https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer__;!zudgQYh0QMg!EhJtrtpaJcy7ASOerP1HmrJqi-JarVz6_ye8TjockXkviQT0XVAkqYkCGxEaNzJKH9E$
________________________________
This message may contain confidential information and is for the sole use of the intended recipient(s). If you are not the intended recipient, do not use, distribute, or copy this e-mail. Please notify the UC Irvine Health – Compliance and Privacy Office via email at hacompliance@uci.edu or by phone 888-456-7006 immediately if you have received this e-mail in error. E-mail transmission cannot be guaranteed to be secure or error-free as information could be intercepted, corrupted, lost, destroyed, arrive late or incomplete, or contain viruses. The sender therefore does not accept liability for any errors or omissions in the contents of this message, which arise as a result of e-mail transmission.
freesurfer@nmr.mgh.harvard.edu
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Greve, Douglas N.,Ph.D. -
Taylor, Lisa Marie