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This addressed my concern! Thank you for the insight. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Greve, Douglas N.,Ph.D. [DGREVE@mgh.harvard.edu] Sent: Friday, November 22, 2019 2:32 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] How do I fix this white matter boundary issue?
Is the ventricle properly segmented in the aseg.presurf.mgz? If not, try running recon-all with -bigventricles
On 11/22/2019 2:21 PM, Taylor, Lisa Marie wrote:
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Hi there,
I am working on a participant that has abnormally large ventricles. This has previously posed an issue with freesurfer by failing with errors but I have been successful this cycle without the job failing. However, after my first round of edits and running recon-all there is a major issue with the WM and Pial boundary area. I am unaware of how to address it. I have attached images to highlight where my concern is. Any insight?
Thank you so much!
Lisa
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