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Hi Lauren,

From the log it actually looks like you have never run "trac-all -c dmrirc -path", but "trac-all -c dmrirc -prep" twice.

Chiara

On May 24, 2023, at 11:51 AM, Lauren Stephens <laurenss@stanford.edumailto:laurenss@stanford.edu> wrote:

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Dear Freesurfer Experts,

We have been working to run a test data set through tracula and have seemingly had success, however when we ran trac-all -path it completed without error but the files created did not go into a dpath folder. The files that were created went into the dmri and dlabel folders. We are specifically looking for the dpath/merged_avg<nsubj>_<inter>_<intra>.mgz file.

We are using Freesurfer 7.3.2 on an iMac Pro running Ventura 13.3.1 in a bash shell. I have attached the dmrirc file. I have also attached the trac-all.log.

Thank you for any help you can provide.

Lauren Stephens

Lauren Stephens, MS Assistant Clinical Research Coordinator Department of Psychiatry and Behavioral Science Stanford University School of Medicine E: laurenss@stanford.edumailto:laurenss@stanford.edu P: (650)-725-1716

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