those are fine.

Jay Ives wrote:

Thanks Doug.

Here are some images from tkmedit.

J

----- Original Message ----- From: "Douglas N Greve" <greve@nmr.mgh.harvard.edu javascript:top.opencompose('greve@nmr.mgh.harvard.edu','','','1')> To: <fji@iinet.net.au javascript:top.opencompose('fji@iinet.net.au','','','1')> Cc: <freesurfer@nmr.mgh.harvard.edu javascript:top.opencompose('freesurfer@nmr.mgh.harvard.edu','','','1')> Sent: Wednesday, October 21, 2009 12:43 AM Subject: Re: [Freesurfer] mgz file is tilted

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probably not (though supplying images would have been helpful). When viewing in tkmedit, tkmedit aligns the view port axes along the scanner coordinates, not the image coords.

doug

Jay Ives wrote:

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My nii files look straight in FSLView, but after converting them to mgz with mri_convert, they are tilted a bit to one side and slightly forwards when viewed with tkmedit. Have I done something wrong, or omitted a necessary command? Thx

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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu

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