Hello,
We are tryying to convert some raw images from our GE LX scanner into cor format using "mri_convert" with plans to do inflation etc.
We have tried a number of ways (see below) to no avail. The program tells us it is "reading images from 001/I.001," but never comes back..... If anyone has any suggestions, I would be very grateful. I am certain that we are overlooking something really obvious.....
mri_convert 001/I.001 ./anat1
mri_convert -ot cor 001/I.001 ./anat1
note that we have the structure subjectID/mri/orig
within the dir "orig" we have 001 002 003 and each contains a 124 slice spgr consecutively numbered starting with I.001
"orig" also contains empty anat1 anat2 anat3 dirs
Many thanks,
Scott
have you tried specifying the input type? What error do you get?
Bruce
On 14 Jun 2004, Scott H. Johnson wrote:
Hello,
We are tryying to convert some raw images from our GE LX scanner into cor format using "mri_convert" with plans to do inflation etc.
We have tried a number of ways (see below) to no avail. The program tells us it is "reading images from 001/I.001," but never comes back..... If anyone has any suggestions, I would be very grateful. I am certain that we are overlooking something really obvious.....
mri_convert 001/I.001 ./anat1
mri_convert -ot cor 001/I.001 ./anat1
note that we have the structure subjectID/mri/orig
within the dir "orig" we have 001 002 003 and each contains a 124 slice spgr consecutively numbered starting with I.001
"orig" also contains empty anat1 anat2 anat3 dirs
Many thanks,
Scott
Hi Scott,
this might be a work around, in case you need something quickly. I put some of Soheil's matlab code into the mri_toolbox at http://eeg.sf.net/ and it should read your GE data OK. See the ge_series_read, ge_series2avw and the avw2cor functions, their documentation is available via the matlab help command and here online,
http://eeg.sourceforge.net/mridoc/index.html
I've not tried to do this with mri_convert, so I can't comment on that.
Best, Darren
Scott H. Johnson wrote:
Hello, We are tryying to convert some raw images from our GE LX scanner into cor format using "mri_convert" with plans to do inflation etc.
We have tried a number of ways (see below) to no avail. The program tells us it is "reading images from 001/I.001," but never comes back..... If anyone has any suggestions, I would be very grateful. I am certain that we are overlooking something really obvious.....
mri_convert 001/I.001 ./anat1 mri_convert -ot cor 001/I.001 ./anat1
note that we have the structure subjectID/mri/orig
within the dir "orig" we have 001 002 003 and each contains a 124 slice spgr consecutively numbered starting with I.001
"orig" also contains empty anat1 anat2 anat3 dirs
Many thanks, Scott
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