Hi Scott,
this might be a work around, in case you need something quickly. I put some of Soheil's matlab code into the mri_toolbox at http://eeg.sf.net/ and it should read your GE data OK. See the ge_series_read, ge_series2avw and the avw2cor functions, their documentation is available via the matlab help command and here online,
http://eeg.sourceforge.net/mridoc/index.html
I've not tried to do this with mri_convert, so I can't comment on that.
Best, Darren
Scott H. Johnson wrote:
Hello, We are tryying to convert some raw images from our GE LX scanner into cor format using "mri_convert" with plans to do inflation etc.
We have tried a number of ways (see below) to no avail. The program tells us it is "reading images from 001/I.001," but never comes back..... If anyone has any suggestions, I would be very grateful. I am certain that we are overlooking something really obvious.....
mri_convert 001/I.001 ./anat1 mri_convert -ot cor 001/I.001 ./anat1
note that we have the structure subjectID/mri/orig
within the dir "orig" we have 001 002 003 and each contains a 124 slice spgr consecutively numbered starting with I.001
"orig" also contains empty anat1 anat2 anat3 dirs
Many thanks, Scott
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