External Email - Use Caution

On 8/9/2023 5:03 AM, inbal paran wrote:

External Email - Use Caution

Dear FreeSurfer developers,

Thank you for your response to my previous questions, I have a few more (I'm inexperienced with both Freesurfer and Linux):

1. Can I visualize my results after running mri_glmfit by using

Freeview, such that the image shows cortical brain regions as well as subcortical brain regions on both hemispheres? If yes - how can I do that?

The vlrmerge script can take maps from lh, rh, and subcortex and merge them into one map.

2. Is there a text file of the glmfit results that includes the

correlation parameters, cluster size, significance/p-values? If yes - where can I find it? If not - how can I generate one?

correlation and sig are maps in the output folder for each contrast. clustersize and clusterwise correction are computed by mri_glmfit-sim. Once you have the clusters, you can run mri_segstats using the ocn file and the correlation map to get means in each cluster

Thank you very much Inbal -- *Inbal Paran, M.PT http://secure-web.cisco.com/1YZJEd4xAGXQnv0pIXxLgi_JVIUWn7hQJs_Lvjrak6I2_f9YXFUYCk84LL9yjNJRfNZi2HG7zFSEgH5uEfnJhKhY6K_4Hh5t7zULP6A1doL3CvzZikE_mMEhhKbmHZIeDj5b-IpcaSDtIRhjAapmzzbYCAGj6mQOv6I0ylG3STYPdUoB7ocmmF5PsXogRUeaU0n56QJlQxVIhRlAO37IGDDUkSNK2vAbp8ZEAHYTVvmO8Hy3kQRV666ZxzLQWRlrJ6JvFQgVDTmt2592q1qm_FQ8uABi_HTCuQVEDqIHDqndb1uHDAKMQEUHf6TsAy3ZV6rbo70-opuV43yEynJh-NQ/http%3A%2F%2FM.PT.

Schwartz Movement analysis & Rehabilitation Laboratory, Physical Therapy Department, Recanati School for Community Health Professions. Faculty of Health Sciences at Ben-Gurion University of the Negev.

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