---------- Forwarded message ---------- From: Paul Beach pabeach1@gmail.com Date: Fri, Sep 27, 2013 at 2:39 PM Subject: Re: [Freesurfer] Question about talairach.m3z file To: Bruce Fischl fischl@nmr.mgh.harvard.edu
So would you suggest, then, that it would be better to use the mri_vol2vol command to transform subject data (anatomical and functional) to MNI space?
On Fri, Sep 27, 2013 at 9:36 AM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Hi Paul
not really. It is a nonlinear transform to our own atlas, which is loosely in MNI space. Doug can probably give you a more precise answer
cheers Bruce
On Fri, 27 Sep 2013, Paul Beach wrote:
Hello Freesurfer community,
I have a question about the file talairach.m3z, which is found in the mri/transforms directory of all subjects that have undergone recon-all. I am utilizing this file in an mri_convert script to resample AFNI processed T1volumes (and time-series data) to MNI space. However, I wanted to confirm which MNI talairach.m3z represents - it's MNI305, correct?
Thanks! Paul -- Paul Beach DO/PhD candidate - Year VI Michigan State University
- College of Osteopathic Medicine
- Neuroscience Program - Bozoki Lab: Neurology/Radiology
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It is more or less mni305. I would use mri_vol2vol but I think that mri_convert should give you the same result. doug
On 09/27/2013 03:02 PM, Paul Beach wrote:
---------- Forwarded message ---------- From: *Paul Beach* <pabeach1@gmail.com mailto:pabeach1@gmail.com> Date: Fri, Sep 27, 2013 at 2:39 PM Subject: Re: [Freesurfer] Question about talairach.m3z file To: Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu>
So would you suggest, then, that it would be better to use the mri_vol2vol command to transform subject data (anatomical and functional) to MNI space?
On Fri, Sep 27, 2013 at 9:36 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu> wrote:
Hi Paul not really. It is a nonlinear transform to our own atlas, which is loosely in MNI space. Doug can probably give you a more precise answer cheers Bruce On Fri, 27 Sep 2013, Paul Beach wrote: Hello Freesurfer community, I have a question about the file talairach.m3z, which is found in the mri/transforms directory of all subjects that have undergone recon-all. I am utilizing this file in an mri_convert script to resample AFNI processed T1volumes (and time-series data) to MNI space. However, I wanted to confirm which MNI talairach.m3z represents - it's MNI305, correct? Thanks! Paul -- Paul Beach DO/PhD candidate - Year VI Michigan State University - College of Osteopathic Medicine - Neuroscience Program - Bozoki Lab: Neurology/Radiology The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- Paul Beach DO/PhD candidate - Year VI Michigan State University
- College of Osteopathic Medicine
- Neuroscience Program
- Bozoki Lab: Neurology/Radiology
-- Paul Beach DO/PhD candidate - Year VI Michigan State University
- College of Osteopathic Medicine
- Neuroscience Program
- Bozoki Lab: Neurology/Radiology
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