Re: [Freesurfer] Fwd: Question about talairach.m3z file

It is more or less mni305. I would use mri_vol2vol but I think that mri_convert should give you the same result. doug

On 09/27/2013 03:02 PM, Paul Beach wrote:

---------- Forwarded message ---------- From: *Paul Beach* <pabeach1@gmail.com mailto:pabeach1@gmail.com> Date: Fri, Sep 27, 2013 at 2:39 PM Subject: Re: [Freesurfer] Question about talairach.m3z file To: Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu>

So would you suggest, then, that it would be better to use the mri_vol2vol command to transform subject data (anatomical and functional) to MNI space?

On Fri, Sep 27, 2013 at 9:36 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu> wrote:

Hi Paul

not really. It is a nonlinear transform to our own atlas, which is
loosely in MNI space. Doug can probably give you a more precise answer

cheers
Bruce

On Fri, 27 Sep 2013, Paul Beach wrote:

    Hello Freesurfer community,
    I have a question about the file talairach.m3z, which is found
    in the
    mri/transforms directory of all subjects that have undergone
    recon-all. I am
    utilizing this file in an mri_convert script to resample AFNI
    processed
    T1volumes (and time-series data) to MNI space. However, I
    wanted to confirm
    which MNI talairach.m3z represents - it's MNI305, correct?


    Thanks!
    Paul
    --
    Paul Beach
    DO/PhD candidate - Year VI
    Michigan State University
    - College of Osteopathic Medicine
    - Neuroscience Program   - Bozoki Lab: Neurology/Radiology




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-- Paul Beach DO/PhD candidate - Year VI Michigan State University

• College of Osteopathic Medicine
• Neuroscience Program
  • Bozoki Lab: Neurology/Radiology

-- Paul Beach DO/PhD candidate - Year VI Michigan State University

• College of Osteopathic Medicine
• Neuroscience Program
  • Bozoki Lab: Neurology/Radiology

---

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