And before you run this, does $SUBJECTS_DIR/HPTU_vol11_2012 exist? BTW, try it without a slash at the end of the name. doug

On 09/14/2012 02:09 PM, Carolina Valencia wrote:

Sure! cvalencia@cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/volumetria$ recon-all -s HPTU_vol11_2012/ -i HPTU_vol11_2012/dicom/MPRAGE.Ser1.Img0.dcm

2012/9/14 Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>

What is your command line?
doug



On 09/14/2012 12:23 PM, Carolina Valencia wrote:
> Hi Freesurfer users:
>
> I'm trying to run recon-all command in a single subject and
> I don't know why always there is an error message about the names, I
> tried the suggestionsin the message, rename the files, folders,
> eliminate the folders etc
> But I don't succeed to star to running my data.
> Many thanks,
>
>
> ERROR: You are trying to re-run an existing subject with (possibly)
>  new input data (-i). If this is truly new input data, you
should delete
>  the subject folder and re-run, or specify a different subject name.
>  If you are just continuing an analysis of an existing subject, then
>  omit all -i flags.
>
> --
> --
> *Carolina Valencia Muñoz*
>
>
>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358 <tel:617-724-2358>
Fax: 617-726-7422 <tel:617-726-7422>

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