Hi all,
Is there any way to obtain (automatically, n~1000 subjects), LGN volumes from the Freesurfer set of tools? Or somehow transform the ROI from an atlas into subject space, then extract volume data?
Thanks, Yash
I probably shouldn’t say this too loud but, after many delays, I might be close to having a working atlas of the thalamic nuclei that I would like to release in FreeSurfer. Hopefully in a couple of months…
-- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Yash Patel ypatel@research.baycrest.org Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Monday, 16 April 2018 at 20:57 To: freesurfer freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Lateral Geniculate Nucleus (LGN) roi or volume measures?
Hi all,
Is there any way to obtain (automatically, n~1000 subjects), LGN volumes from the Freesurfer set of tools? Or somehow transform the ROI from an atlas into subject space, then extract volume data?
Thanks, Yash
Hi Yash
we hae some prototypes for LGN but nothing ready for primetime yet
sorry Bruce On Mon, 16 Apr 2018, Yash Patel wrote:
Hi all, Is there any way to obtain (automatically, n~1000 subjects), LGN volumes from the Freesurfer set of tools? Or somehow transform the ROI from an atlas into subject space, then extract volume data?
Thanks, Yash
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Iglesias Gonzalez, Eugenio -
Yash Patel