We do have write permission. It did report low space so we tried changing the space on the virtual box from 8 to 16 MB. Now it doen't even power on. Will try changing it back. On 28 January 2010 15:36, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

Hi Jan,

is there enough space in /usr/local/freesurfer/subjects/jan? Do you have write permission?

Bruce

On Thu, 28 Jan 2010, Janani Dhinakaran wrote:

Hello,

...

I encountered a problem with the command recon-all -s jan -autorecon-all which is supposed to be for all the steps. A full reconstruction. INFO: set hdr.hist.orient to -1 ERROR: failure writing

/usr/local/freesurfer/subjects/jan/mri/tmp-mri_motion_correct.fsl-5574/cor-2.img

So I tried flipping the axis- X, Y, Z then, XY, XZ, and finally YZ...which is the format it converted into for it's .mgz file. It still says the same thing.

Next I tried recon1 (from step 1 to 5). It doesn't recognise the command. Command not found, or unrecognised.

Please tell me what I can try to make this work.

Thank you. Jan