External Email - Use Caution
Dear freesurfer experts,
I was trying to use synthseg for segmenting and parcellating a heterogeneous brain with lesions. It is advised in the freesurfer synthseg webpage to use mri_WMHsynthseg command for these cases. How ever when I tried to run the command, it shows that command not found. I checked mri_synsthseg command works. What shall I do to resolve this? Is there a way to install the mri_WMHsynthseg or is it part of some existing commands?
Regards, Naveen Kumar
Dear Naveen, WMH-SynthSeg is currently only available in the development version of FreeSurfer. I have updated the wiki with this information. Apologies for the inconvenience. /E -- Juan Eugenio Iglesias http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Byripudi Naveen Kumar ed20d402 ed20d402@smail.iitm.ac.in Date: Friday, June 28, 2024 at 5:40 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Can find "mri_WMHsynthseg" command in freesurfer 7.4.1
External Email - Use Caution Dear freesurfer experts,
I was trying to use synthseg for segmenting and parcellating a heterogeneous brain with lesions. It is advised in the freesurfer synthseg webpage to use mri_WMHsynthseg command for these cases. How ever when I tried to run the command, it shows that command not found. I checked mri_synsthseg command works. What shall I do to resolve this? Is there a way to install the mri_WMHsynthseg or is it part of some existing commands?
Regards, Naveen Kumar
freesurfer@nmr.mgh.harvard.edu
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Byripudi Naveen Kumar ed20d402 -
Iglesias Gonzalez, Juan E.