External Email - Use Caution
Dear all,
As evidently experienced by others, a certain percentage of subjects failed to run on freesurfer 7.1 version, stopping at the segmentation step, while they could run in version 6.
I read that this is bug is present in Mac os, which I am using (high sierra). I tried to fix it, as advised, using the following lines of code suggested:
cd $FREESURFER_HOME/bin sudo rm rca-long-tp-init sudo curl https://raw.githubusercontent.com/freesurfer/freesurfer/dev/scripts/rca-long... -o rca-long-tp-init sudo chmod +x rca-long-tp-init
The first line seems to work. However, I get the following errors when runnding the lines from sudo curl:
anneliess-ipro:bin k6-anneva1-s$ sudo curl https://raw.githubusercontent.com/freesurfer/freesurfer/dev/scripts/rca-long... -o rca-long-tp-init sudo chmod +x rca-long-tp-init
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 13012 100 13012 0 0 35881 0 --:--:-- --:--:-- --:--:-- 35944
curl: (6) Could not resolve host: sudo
curl: (6) Could not resolve host: chmod
curl: (6) Could not resolve host: +x
curl: (6) Could not resolve host: rca-long-tp-init
I had already given my sudo password in the first step. I might be doing something very basic wrong. Could somebody help?
Thanks!
Annelies
Annelies van't Westeinde | PHD Candidate Department of Women's and Children's Health | Karolinska Institutet 171 77 Solna | Karolinskavägen 37A +46 760967499 annelies.vant.westeinde@ki.se | ki.sehttp://ki.se/en/startpage ______________________________________ Karolinska Institutet – a medical university
När du skickar e-post till Karolinska Institutet (KI) innebär detta att KI kommer att behandla dina personuppgifter. Här finns information om hur KI behandlar personuppgifterhttps://ki.se/medarbetare/integritetsskyddspolicy.
Sending email to Karolinska Institutet (KI) will result in KI processing your personal data. You can read more about KI’s processing of personal data herehttps://ki.se/en/staff/data-protection-policy.
External Email - Use Caution
The 2nd line are actually 2 commands, you have to split them:
The first one downloads a file:
sudo curl https://raw.githubusercontent.com/freesurfer/freesurfer/dev/scripts/rca-long... -o rca-long-tp-init
The second command makes it executable:
sudo chmod +x rca-long-tp-init
Best,
Tim
On June 17, 2020 at 11:09 AM Annelies Vant Westeinde annelies.vant.westeinde@ki.se wrote:
External Email - Use CautionDear all,
As evidently experienced by others, a certain percentage of subjects failed to run on freesurfer 7.1 version, stopping at the segmentation step, while they could run in version 6.
I read that this is bug is present in Mac os, which I am using (high sierra). I tried to fix it, as advised, using the following lines of code suggested:
cd $FREESURFER_HOME/bin sudo rm rca-long-tp-init sudo curl https://raw.githubusercontent.com/freesurfer/freesurfer/dev/scripts/rca-long... -o rca-long-tp-init sudo chmod +x rca-long-tp-init
The first line seems to work. However, I get the following errors when runnding the lines from sudo curl:
anneliess-ipro:bin k6-anneva1-s$ sudo curl https://raw.githubusercontent.com/freesurfer/freesurfer/dev/scripts/rca-long... -o rca-long-tp-init sudo chmod +x rca-long-tp-init
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed100 13012 100 13012 0 0 35881 0 --:--:-- --:--:-- --:--:-- 35944
curl: (6) Could not resolve host: sudo
curl: (6) Could not resolve host: chmod
curl: (6) Could not resolve host: +x
curl: (6) Could not resolve host: rca-long-tp-init
I had already given my sudo password in the first step. I might be doing something very basic wrong. Could somebody help?
Thanks!
Annelies
Annelies van't Westeinde | PHD Candidate Department of Women's and Children's Health | Karolinska Institutet 171 77 Solna | Karolinskavägen 37A +46 760967499 annelies.vant.westeinde@ki.se | ki.sehttp://ki.se/en/startpage ______________________________________ Karolinska Institutet – a medical university
När du skickar e-post till Karolinska Institutet (KI) innebär detta att KI kommer att behandla dina personuppgifter. Här finns information om hur KI behandlar personuppgifterhttps://ki.se/medarbetare/integritetsskyddspolicy.
Sending email to Karolinska Institutet (KI) will result in KI processing your personal data. You can read more about KI’s processing of personal data herehttps://ki.se/en/staff/data-protection-policy. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Annelies Vant Westeinde -
Tim Schäfer