Dear surfers,

I am trying to measure the distance between two activated vertices...

Now, I run "mris_pmake --optionsFile=options.txt" and here is the options.txt file below ************, But I did not get any result on the window or ./ores.log file...

How can I get the result from mris_pmake ?

Thanks in advance.

Hyungjun Kim (Korea Institute of Oriental Medicine)

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# # auto-generated optionsFile #

# Input surfaces and curvature functions surfaceFile = /mnt/data1/subjects/csm0928/surf/lh.inflated auxSurfaceFile = /mnt/data1/subjects/csm0928/surf/lh.smoothwm curvatureFile = /mnt/data1/subjects/csm0928/surf/lh.smoothwm.H.crv sulcalHeightFile = /mnt/data1/subjects/csm0928/surf/lh.sulc

# Start and End vertices

startVertex = 1803 endVertex = 44765

# Control flags and settings controlPort = 1701 timeoutSec = 60 b_transitionPenalties = 0 b_syslogPrepend = 1 b_patchFile_save = 0 b_labelFile_save = 1 b_useAbsCurvs = 0 b_exitOnDone = 1 b_costPathSave = 0

# Output file names and file stems costFile = cost.txt patchFile = dijk labelFile = dijk labelFileAuxSurface = dijkAuxSurface

# Messaging channels userMessages = ./user_msg.log sysMessages = ./osys.log resultMessages = ./ores.log

# Weights wd = 1.000000 wc = 0.000000 wh = 0.000000 wdc = 0.000000 wdh = 0.000000 wch = 0.000000 wdch = 0.000000 wdir = 0.000000

# Transitional penality weights Dwd = 1.000000 Dwc = 1.000000 Dwh = 1.000000 Dwdc = 1.000000 Dwdh = 1.000000 Dwch = 1.000000 Dwdch = 1.000000 Dwdir = 1.000000

# mpmProg mpmProgID = 2 mpmArgs = startVertex:1803,endVertex:44765 costCurvFile = lh.autodijk.crv

# mpmOverlay mpmOverlayID = 3

# Debugging -- change at your own risk! b_mpmProgUse = 1 b_mpmOverlayUse = 0