We don't have ways to automatically segment those (yet). They were optimistically added to the LUT a few years ago:)

On 12/14/18 10:49 AM, Chama Belkhiria wrote:

External Email - Use Caution

Dear comittee, I need ROIs of Inferior Colliculus and Brainstem-cochlear-nucleus. Can freesurfer distinguish it from other brainstem structures in segmentation? I have found these references in the LUT "7100 Brainstem-inferior-colliculus and 7101 Brainstem-cochlear-nucleus", but idid not find them in the aseg or aparac files. How to measure the volume and thickness of these regions? Thank you in advance Chama

***** Post Doctoral Researcher Audition and Cognition Center Neurosciences Department Faculty of Medicine, University of Chile

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer