Hi Lin

When you extracted the archive, did you encounter any errors? You seem to be following the right steps.

Also check if the md5 sum is correct

$md5sum freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0.tar.gz

It should output ba9d374e611d7a22a4c484e333b60b4c

(see http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/md5sum.txt )

-Krish

On 7/12/11 9:34 AM, 林鄞 wrote:

Dear everyone,

I just have a problem when installing Freesurfer. I can’t process the command of “tkmedit”.

How can I solve this problem?

Thank you!

setenv FREESURFER_HOME /usr/local/freesurfer

source $FREESURFER_HOME/SetUpFreeSurfer.csh

setenv FREESURFER_HOME opt/freesurfer

source $FREESURFER_HOME/SetUpFreeSurfer.csh

psylab-Lenovo:~> sudo tcsh

[sudo] password for psylab:

psylab-Lenovo:~# setenv FREESURFER_HOME /usr/local/freesurfer

psylab-Lenovo:~# source $FREESURFER_HOME/SetUpFreeSurfer.csh

-------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 --------

Setting up environment for FreeSurfer/FS-FAST (and FSL)

FREESURFER_HOME /usr/local/freesurfer

FSFAST_HOME /usr/local/freesurfer/fsfast

FSF_OUTPUT_FORMAT nii.gz

SUBJECTS_DIR /usr/local/freesurfer/subjects

MNI_DIR /usr/local/freesurfer/mni

psylab-Lenovo:~# sudo tkmedit bert orig.mgz

sudo: tkmedit: command not found

psylab-Lenovo:~# sudo tcsh

psylab-Lenovo:~# tkmedit bert orig.mgz

tkmedit: Command not found.

psylab-Lenovo:~# apt -get tkmedit

apt: Command not found.

psylab-Lenovo:~#

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