Hi Lin
When you extracted the archive, did you encounter any errors? You seem to be following the right steps.
Also check if the md5 sum is correct
$md5sum freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0.tar.gz
It should output ba9d374e611d7a22a4c484e333b60b4c
(see http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/md5sum.txt )
-Krish
On 7/12/11 9:34 AM, 林鄞 wrote:
Dear everyone,
I just have a problem when installing Freesurfer. I can’t process the command of “tkmedit”.
How can I solve this problem?
Thank you!
setenv FREESURFER_HOME /usr/local/freesurfer
source $FREESURFER_HOME/SetUpFreeSurfer.csh
setenv FREESURFER_HOME opt/freesurfer
source $FREESURFER_HOME/SetUpFreeSurfer.csh
psylab-Lenovo:~> sudo tcsh
[sudo] password for psylab:
psylab-Lenovo:~# setenv FREESURFER_HOME /usr/local/freesurfer
psylab-Lenovo:~# source $FREESURFER_HOME/SetUpFreeSurfer.csh
-------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer
FSFAST_HOME /usr/local/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /usr/local/freesurfer/subjects
MNI_DIR /usr/local/freesurfer/mni
psylab-Lenovo:~# sudo tkmedit bert orig.mgz
sudo: tkmedit: command not found
psylab-Lenovo:~# sudo tcsh
psylab-Lenovo:~# tkmedit bert orig.mgz
tkmedit: Command not found.
psylab-Lenovo:~# apt -get tkmedit
apt: Command not found.
psylab-Lenovo:~#
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