you can setenv FSLDIR /usr/pubsw/packages/fsl/3.3.7 then re-source the stable3 environment.

doug

jkuster@PARTNERS.ORG wrote:

Hi Doug,

Thanks for your messages. We have to keep using stable3 for the rest of this study. Does this mean we can just use a command to use the older version of fsl to fix the ispl error?

Thanks, Jake ------Original Message------ From: Douglas N Greve To: swoodman@nmr.mgh.harvard.edu Cc: freesurfer@nmr.mgh.harvard.edu Cc: jkuster@partners.org Subject: Re: [Freesurfer] preproc-sess error Sent: Aug 2, 2010 1:54 PM

If you're going to continue to use stable3 then you will need to have an old version of FSL (the ip program is an FSL program from several versions ago). Can you start using the new version of FSFAST?

doug

swoodman@nmr.mgh.harvard.edu wrote:

...

Additional info:

FREESURFER_HOME: /usr/local/freesurfer/stable3

Build stamp: freesurfer-Linux-centos4_x86_64-stable-v3.0.5-20070714

RedHat release: CentOS release 5.5 (Final)

Kernel info: Linux 2.6.18-194.8.1.el5 x86_64

NMR Center info (/space/freesurfer exists):

Does this give you the info you're looking for?

Thanks,

Sandra

...

which version are you using?

swoodman@nmr.mgh.harvard.edu wrote:

...

Hello everyone,

I keep encountering the same error when running some preprocessing steps (spatial smooting part).

I run the command line:

preproc-sess -s CD_DMRFASL_pat4 -df sessdirfile -mcout fmc5 -fwhm 5 -smin fmc5 -smout fmcsm5

And I encounter this error:

ERROR: cannot find /usr/pubsw/packages/fsl/current/bin/ip ERROR: ipfsl failed ERROR: spatialsmooth-sess failed

Any help/advice would be much appreciated!

Thanks,

Sandra

---

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