New subject: ERROR: dimension mismatch between input volume and seg - VolumeROICorticalThickness

17 Jul 2017

      Hi Douglas Greve,
Yes, I'm getting the same result as mentioned below.
Regards,
Janani
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Did you get exactly the same error?
On 07/14/2017 02:05 AM, M Janani wrote:
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Hi Douglas Greve
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https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=from:%22Douglas+Greve%22,
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          Thanks for your support.

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I tried with the  --reshape-factor 6. But it didn't work for me.
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          The segmentation was created using the below mentioned data

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1.SPM standard ROI
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2..dat file generated using the T1.nii(available in SPM8 template) and
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fsaverage.
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Please help us to proceed further.
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Regards,
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Janani
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How did you create the segmentation? You can change the shape of the
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seg with mri_surf2surf --reshape 6 --s fsaverage --hemi lh --sval
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seg.mgh --tval seg.reshape.mgh
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On 7/7/17 10:15 AM, M Janani wrote:
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Hi Team,
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I'm attempting to extract cortical thickness values for a
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region-of-interest (ROI) defined in volume spacesubject for PiB MRI.
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I got the below mentioned error while computing the stats value
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cwd
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cmdline mri_segstats --seg
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freesurfer/subjects/fsaverage/surf/lh.fsaverage.CBLROI.mgh --in
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lh.thickness.fsaverage.mgh --sum segstats-CBLROI.txt
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sysname  Linux
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hostname teslak80
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machine  x86_64
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user     lakshman
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UseRobust  0
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Loading /freesurfer/subjects/fsaverage/surf/lh.fsaverage.CBLROI.mgh
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Loading lh.thickness.fsaverage.mgh
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ERROR: dimension mismatch between input volume and seg
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input 27307 1 6
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seg   23406 1 7
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I tried with the solution provided in the below mail, but it didn't
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work for me
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https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-January/027405.h...https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-January/027405.html
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https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-January/027405.html
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https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-January/027405.html
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Any help would be really helpful.
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Regards,
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Janani
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
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Re: [Freesurfer] ERROR: dimension mismatch between input volume and seg - VolumeROICorticalThickness