External Email - Use Caution

Dear Eugenio,

here it is:

asegModBinDilated.mgz asegModBinDilatedResampled.mgz asegModCHA.mgz asegMod.mgz asmr1.mgz asmr2.mgz asmr3.mgz compressionLookupTable.txt discreteLabels_all.mgz discreteLabelsMergedBodyHead.mgz discreteLabels.mgz discreteLabelsWholeBodyHead.mgz error.log hippoAmygBinaryMask_autoCropped.mgz hippoAmygBinaryMask.mgz hippoMaskDilated5mm.mgz hippoMask.mgz hippoMaskResampledDilated.mgz hippoMaskResampled.mgz imageDump.mgz image.mgz T1resampled.mgz trash.lta volumesAmygdala.txt volumesHippo.txt warpedMeshNoAffine.txt.gz warpedMesh.txt.gz warpedOriginalMesh.txt.gz

Antonin

Dear Antonin, Can you please send me a listing of the files in: /hydra-db/hydra_io/vypocty/freeSurfer/A_analysis_HPC_PFC/A_links_all/ESO_C00577_20160303_1246_1/tmp/hippoSF_T1_v21_right/ Kind regards, /Eugenio-- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC) University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/

From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Antonin Skoch a...@ikem.cz Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Friday, 17 August 2018 at 18:16 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] segmentHA_T1.sh exits with error

External Email - Use Caution Dear experts,

I am running segmentHA_T1.sh. In about 3 subjects from 200, the script exits with following error:

In an assignment A(:) = B, the number of elements in A and B must be the same.

Error in segmentSubjectT1_autoEstimateAlveusML (line 1856)

MATLAB:subsassignnumelmismatch Command exited with non-zero status 255

Full log file is attached. I have also uploaded whole subject (named segmentHA_T1_error.tar.gz ), including content of temporary directory hippoSF_T1_v21_right, to your server.

I am using dev version, build 2018-07-28. I am using customized recon-all, but it should not relate to this error. Could you please look at this issue?

Regards,

Antonin Skoch