Dear Freesurfer Developers, 6.0 Stable in OS X seems to have some bugs. Monte-Carlo simulation works fine in 10mm FWMH, but error shows up in 5mm or 0mm as below. ###Error Code### ERROR: CSDread(): could not open /Applications/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm4/abs/th13/mc-z.csd ERROR! Error in Monte Carlo simulation: Error running mri_surfcluster! ###Error Code### I found that the actual directory contains cud file is fwhm04, and not fwhm4, so after I copied fwhm04 to fwhm4 in cortex directory, the simulation works.I think it’s small bug, but can make many people (like me) confused. Bests,J.
what version of FS are you running?
On 3/18/17 11:41 AM, June Kang wrote:
Dear Freesurfer Developers,
6.0 Stable in OS X seems to have some bugs. Monte-Carlo simulation works fine in 10mm FWMH, but error shows up in 5mm or 0mm as below. ###Error Code### ERROR: CSDread(): could not open /Applications/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm4/abs/th13/mc-z.csd ERROR! Error in Monte Carlo simulation: Error running mri_surfcluster! ###Error Code### I found that the actual directory contains cud file is fwhm04, and not fwhm4, so after I copied fwhm04 to fwhm4 in cortex directory, the simulation works. I think it’s small bug, but can make many people (like me) confused. Bests, J.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The version downloaded in offical page. 6.0 stable for OS X.
On Mar 20, 2017, at 11:02 AM, Douglas Greve greve@nmr.mgh.harvard.edu wrote:
what version of FS are you running?
On 3/18/17 11:41 AM, June Kang wrote:
Dear Freesurfer Developers,
6.0 Stable in OS X seems to have some bugs.
Monte-Carlo simulation works fine in 10mm FWMH, but error shows up in 5mm or 0mm as below.
###Error Code###
ERROR: CSDread(): could not open /Applications/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm4/abs/th13/mc-z.csd
ERROR!
Error in Monte Carlo simulation: Error running mri_surfcluster!
###Error Code###
I found that the actual directory contains cud file is fwhm04, and not fwhm4, so after I copied fwhm04 to fwhm4 in cortex directory, the simulation works. I think it’s small bug, but can make many people (like me) confused.
Bests, J.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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not sure what is going on there. Can you send the full terminal output? Also can you email me the mri_glmfit-sim file?
On 3/19/17 11:00 PM, June Kang wrote:
The version downloaded in offical page. 6.0 stable for OS X.
On Mar 20, 2017, at 11:02 AM, Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
what version of FS are you running?
On 3/18/17 11:41 AM, June Kang wrote:
Dear Freesurfer Developers,
6.0 Stable in OS X seems to have some bugs. Monte-Carlo simulation works fine in 10mm FWMH, but error shows up in 5mm or 0mm as below. ###Error Code### ERROR: CSDread(): could not open /Applications/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm4/abs/th13/mc-z.csd ERROR! Error in Monte Carlo simulation: Error running mri_surfcluster! ###Error Code### I found that the actual directory contains cud file is fwhm04, and not fwhm4, so after I copied fwhm04 to fwhm4 in cortex directory, the simulation works. I think it’s small bug, but can make many people (like me) confused. Bests, J.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Douglas Greve -
June Kang