hello!
in mri_surf2surf, does anyone know how to specify the source and target formats if --sval is annot without using --sval-annot, as in "--sfmt" or "--tfmt"?
cheers, @rno
If the source is an annot, then you need to use --sval-annot Is this causing a problem? doug
On 5/24/12 6:48 PM, Arno Klein wrote:
hello!
in mri_surf2surf, does anyone know how to specify the source and target formats if --sval is annot without using --sval-annot, as in "--sfmt" or "--tfmt"?
cheers, @rno
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
hi doug,
we are trying to figure out if for annot we *have to* use sval-annot or if there is a way to do it with sval?
cheers,
satra
On Fri, May 25, 2012 at 9:46 AM, Douglas Greve greve@nmr.mgh.harvard.eduwrote:
If the source is an annot, then you need to use --sval-annot Is this causing a problem? doug
On 5/24/12 6:48 PM, Arno Klein wrote:
hello!
in mri_surf2surf, does anyone know how to specify the source and target formats if --sval is annot without using --sval-annot, as in "--sfmt" or "--tfmt"?
cheers, @rno
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Currently, yes. If this is a burden for you, I could hack something. There might be other ways such as converting the annot into a segmentation (mris_annotation2label), passing that to surf2surf with --sval (and --mapmethod nnf), then converting the output back to an annotation (mris_seg2annot). This is what happens internally. doug
On 05/25/2012 09:52 AM, Satrajit Ghosh wrote:
hi doug,
we are trying to figure out if for annot we *have to* use sval-annot or if there is a way to do it with sval?
cheers,
satra
On Fri, May 25, 2012 at 9:46 AM, Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
If the source is an annot, then you need to use --sval-annot Is this causing a problem? doug On 5/24/12 6:48 PM, Arno Klein wrote:hello! in mri_surf2surf, does anyone know how to specify the source and target formats if --sval is annot without using --sval-annot, as in "--sfmt" or "--tfmt"? cheers, @rno _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
hi doug,
thanks. we just wanted to verify that annot's are special. no need to hack anything!
cheers,
satra
On Fri, May 25, 2012 at 11:27 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu
wrote:
Currently, yes. If this is a burden for you, I could hack something. There might be other ways such as converting the annot into a segmentation (mris_annotation2label), passing that to surf2surf with --sval (and --mapmethod nnf), then converting the output back to an annotation (mris_seg2annot). This is what happens internally. doug
On 05/25/2012 09:52 AM, Satrajit Ghosh wrote:
hi doug,
we are trying to figure out if for annot we *have to* use sval-annot or if there is a way to do it with sval?
cheers,
satra
On Fri, May 25, 2012 at 9:46 AM, Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
If the source is an annot, then you need to use --sval-annot Is this causing a problem? doug On 5/24/12 6:48 PM, Arno Klein wrote:hello! in mri_surf2surf, does anyone know how to specify the source and target formats if --sval is annot without using --sval-annot, as in "--sfmt" or "--tfmt"? cheers, @rno _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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