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You are right. I want simply to correlate myelin and nhpt regressing out age. I did it with the following matrix: 0 0 1
And it seems to work. Is it ok this matrix?
Thanks a lot Rafael
Il giorno gio 11 apr 2019 alle 00:22 Greve, Douglas N.,Ph.D. < DGREVE@mgh.harvard.edu> ha scritto:
That will compute the average of the Age slope and the NHPT slope. Probably not what you want to do
On 4/6/19 12:24 PM, TMS lab wrote:
External Email - Use CautionDear Freesurfer team,
I'm running a correlation analysis where I'd like to corelate myelination and a clinical parameter (NHPT) regressing out the effect of age.
My contrast.mtx: 0 0 0.5 0.5
This is my FSGD FILE: GroupDescriptorFile 1 Title Myelin Class Main Variables Age NHPT Inputfs_CGaMain 19 18.2 .......
Is the matrix ok?
Thanks Rafael
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
That should have failed because it only has 3 values (should have 4). I think it should be 0 0 0 1
On 4/11/19 3:20 AM, TMS lab wrote:
External Email - Use Caution
You are right. I want simply to correlate myelin and nhpt regressing out age. I did it with the following matrix: 0 0 1 And it seems to work. Is it ok this matrix?
Thanks a lot Rafael
Il giorno gio 11 apr 2019 alle 00:22 Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu mailto:DGREVE@mgh.harvard.edu> ha scritto:
That will compute the average of the Age slope and the NHPT slope. Probably not what you want to do On 4/6/19 12:24 PM, TMS lab wrote: > > External Email - Use Caution > > Dear Freesurfer team, > > I'm running a correlation analysis where I'd like to corelate > myelination and a clinical parameter (NHPT) regressing out the effect > of age. > > My contrast.mtx: 0 0 0.5 0.5 > > This is my FSGD FILE: > GroupDescriptorFile 1 > Title Myelin > Class Main > Variables Age NHPT > Inputfs_CGaMain 19 18.2 > ....... > > Is the matrix ok? > > Thanks > Rafael > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Unfortunately I get such error message with the matrix 0 0 0 1 ERROR: dimension mismatch between X and contrast contrast.mtx X has 3 cols, C has 4 cols
Instead if I use 0 0 1, it works
Best, RAFAEL That should have failed because it only has 3 values (should have 4). I think it should be 0 0 0 1
On 4/11/19 3:20 AM, TMS lab wrote:
External Email - Use CautionYou are right. I want simply to correlate myelin and nhpt regressing out age. I did it with the following matrix: 0 0 1 And it seems to work. Is it ok this matrix?
Thanks a lot Rafael
Il giorno gio 11 apr 2019 alle 00:22 Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu mailto:DGREVE@mgh.harvard.edu> ha scritto:
That will compute the average of the Age slope and the NHPT slope. Probably not what you want to do On 4/6/19 12:24 PM, TMS lab wrote: > > External Email - Use Caution > > Dear Freesurfer team, > > I'm running a correlation analysis where I'd like to corelate > myelination and a clinical parameter (NHPT) regressing out the effect > of age. > > My contrast.mtx: 0 0 0.5 0.5 > > This is my FSGD FILE: > GroupDescriptorFile 1 > Title Myelin > Class Main > Variables Age NHPT > Inputfs_CGaMain 19 18.2 > ....... > > Is the matrix ok? > > Thanks > Rafael > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
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Il giorno gio 11 apr 2019 alle ore 09:20 TMS lab tmslabna@gmail.com ha scritto:
You are right. I want simply to correlate myelin and nhpt regressing out age. I did it with the following matrix: 0 0 1
And it seems to work. Is it ok this matrix?
Thanks a lot Rafael
Il giorno gio 11 apr 2019 alle 00:22 Greve, Douglas N.,Ph.D. < DGREVE@mgh.harvard.edu> ha scritto:
That will compute the average of the Age slope and the NHPT slope. Probably not what you want to do
On 4/6/19 12:24 PM, TMS lab wrote:
External Email - Use CautionDear Freesurfer team,
I'm running a correlation analysis where I'd like to corelate myelination and a clinical parameter (NHPT) regressing out the effect of age.
My contrast.mtx: 0 0 0.5 0.5
This is my FSGD FILE: GroupDescriptorFile 1 Title Myelin Class Main Variables Age NHPT Inputfs_CGaMain 19 18.2 .......
Is the matrix ok?
Thanks Rafael
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
what is your command line?
On 4/11/19 3:53 PM, TMS lab wrote:
External Email - Use Caution
Unfortunately I get such error message with the matrix 0 0 0 1 ERROR: dimension mismatch between X and contrast contrast.mtx X has 3 cols, C has 4 cols
Instead if I use 0 0 1, it works
Best, RAFAEL That should have failed because it only has 3 values (should have 4). I think it should be 0 0 0 1
On 4/11/19 3:20 AM, TMS lab wrote:
External Email - Use Caution
You are right. I want simply to correlate myelin and nhpt regressing out age. I did it with the following matrix: 0 0 1 And it seems to work. Is it ok this matrix?
Thanks a lot Rafael
Il giorno gio 11 apr 2019 alle 00:22 Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu
mailto:DGREVE@mgh.harvard.edu <mailto:DGREVE@mgh.harvard.edu mailto:DGREVE@mgh.harvard.edu>> ha scritto:
That will compute the average of the Age slope and the NHPT slope. Probably not what you want to do
On 4/6/19 12:24 PM, TMS lab wrote: > > External Email - Use Caution > > Dear Freesurfer team, > > I'm running a correlation analysis where I'd like to corelate > myelination and a clinical parameter (NHPT) regressing out the effect > of age. > > My contrast.mtx: 0 0 0.5 0.5 > > This is my FSGD FILE: > GroupDescriptorFile 1 > Title Myelin > Class Main > Variables Age NHPT > Inputfs_CGaMain 19 18.2 > ....... > > Is the matrix ok? > > Thanks > Rafael > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu
mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu
mailto:Freesurfer@nmr.mgh.harvard.edu>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu>
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Il giorno gio 11 apr 2019 alle ore 09:20 TMS lab <tmslabna@gmail.com mailto:tmslabna@gmail.com> ha scritto:
You are right. I want simply to correlate myelin and nhpt regressing out age. I did it with the following matrix: 0 0 1 And it seems to work. Is it ok this matrix? Thanks a lot Rafael Il giorno gio 11 apr 2019 alle 00:22 Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu <mailto:DGREVE@mgh.harvard.edu>> ha scritto: That will compute the average of the Age slope and the NHPT slope. Probably not what you want to do On 4/6/19 12:24 PM, TMS lab wrote: > > External Email - Use Caution > > Dear Freesurfer team, > > I'm running a correlation analysis where I'd like to corelate > myelination and a clinical parameter (NHPT) regressing out the effect > of age. > > My contrast.mtx: 0 0 0.5 0.5 > > This is my FSGD FILE: > GroupDescriptorFile 1 > Title Myelin > Class Main > Variables Age NHPT > Inputfs_CGaMain 19 18.2 > ....... > > Is the matrix ok? > > Thanks > Rafael > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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mri_glmfit --y lh.t1t2ratio_12CMT_fmed_3sm_decurv.fsavg.mgh --fsgd age_dexterity.fsgd --surf fsaverage lh --C contrast.mtx --o lh_NHPT_T1T2_12CMT_allbrain
Il giorno gio 11 apr 2019 alle ore 21:58 Greve, Douglas N.,Ph.D. < DGREVE@mgh.harvard.edu> ha scritto:
what is your command line?
On 4/11/19 3:53 PM, TMS lab wrote:
External Email - Use CautionUnfortunately I get such error message with the matrix 0 0 0 1 ERROR: dimension mismatch between X and contrast contrast.mtx X has 3 cols, C has 4 cols
Instead if I use 0 0 1, it works
Best, RAFAEL That should have failed because it only has 3 values (should have 4). I think it should be 0 0 0 1
On 4/11/19 3:20 AM, TMS lab wrote:
External Email - Use CautionYou are right. I want simply to correlate myelin and nhpt regressing out age. I did it with the following matrix: 0 0 1 And it seems to work. Is it ok this matrix?
Thanks a lot Rafael
Il giorno gio 11 apr 2019 alle 00:22 Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu
mailto:DGREVE@mgh.harvard.edu <mailto:DGREVE@mgh.harvard.edu mailto:DGREVE@mgh.harvard.edu>> ha scritto:
That will compute the average of the Age slope and the NHPT slope.Probably not what you want to do
On 4/6/19 12:24 PM, TMS lab wrote: > > External Email - Use Caution > > Dear Freesurfer team, > > I'm running a correlation analysis where I'd like to corelate > myelination and a clinical parameter (NHPT) regressing out theeffect > of age. > > My contrast.mtx: 0 0 0.5 0.5 > > This is my FSGD FILE: > GroupDescriptorFile 1 > Title Myelin > Class Main > Variables Age NHPT > Inputfs_CGaMain 19 18.2 > ....... > > Is the matrix ok? > > Thanks > Rafael > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu
mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu
mailto:Freesurfer@nmr.mgh.harvard.edu>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
Freesurfer@nmr.mgh.harvard.edu
mailto:Freesurfer@nmr.mgh.harvard.edu>
RispondiRispondi a tuttiInoltra
Il giorno gio 11 apr 2019 alle ore 09:20 TMS lab <tmslabna@gmail.com mailto:tmslabna@gmail.com> ha scritto:
You are right. I want simply to correlate myelin and nhpt regressing out age. I did it with the following matrix: 0 0 1 And it seems to work. Is it ok this matrix? Thanks a lot Rafael Il giorno gio 11 apr 2019 alle 00:22 Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu <mailto:DGREVE@mgh.harvard.edu>> ha scritto: That will compute the average of the Age slope and the NHPT slope. Probably not what you want to do On 4/6/19 12:24 PM, TMS lab wrote: > > External Email - Use Caution > > Dear Freesurfer team, > > I'm running a correlation analysis where I'd like to corelate > myelination and a clinical parameter (NHPT) regressing out the effect > of age. > > My contrast.mtx: 0 0 0.5 0.5 > > This is my FSGD FILE: > GroupDescriptorFile 1 > Title Myelin > Class Main > Variables Age NHPT > Inputfs_CGaMain 19 18.2 > ....... > > Is the matrix ok? > > Thanks > Rafael > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Greve, Douglas N.,Ph.D. -
Raffaele Dubbioso -
TMS lab