Re: [Freesurfer] Shift in cortical parcellation, issues with previously suggested solution
Hi,
I believe so, I ran the following commands:
mris_register -L subject/label/?h.central_sulcus.label $FREESURFER_HOME/average/?h.destrieux.simple.2009-07-29.gcs S_central subject/surf/?h.sphere $FREESURFER_HOME/average/?h.average.curvature.filled.buckner40.tif subject/surf/?h.sphere.reg.new
and then: mris_ca_label subject ?h subject/surf/?h.sphere.reg.new $FREESURFER_HOME/average/?h.destrieux.simple.2009-07-29.gcs subject/label/?h.aparc.a2009s.annot.new
Overlaying the new annot-file over the inflated surface with the sulci visible moved the central sulcus to the designated spot (please see attached). This however seems to have caused the S_front_inf (yellow outline) to split into two.
Kind regards,
Carl
please include previous emails, otherwise I won't know what "I believe so" refers to
On 9/1/2022 3:45 PM, Trolle, Carl wrote:
Hi,
I believe so, I ran the following commands:
mris_register -L subject/label/?h.central_sulcus.label $FREESURFER_HOME/average/?h.destrieux.simple.2009-07-29.gcs S_central subject/surf/?h.sphere $FREESURFER_HOME/average/?h.average.curvature.filled.buckner40.tif subject/surf/?h.sphere.reg.new
and then: mris_ca_label subject ?h subject/surf/?h.sphere.reg.new $FREESURFER_HOME/average/?h.destrieux.simple.2009-07-29.gcs subject/label/?h.aparc.a2009s.annot.new
Overlaying the new annot-file over the inflated surface with the sulci visible moved the central sulcus to the designated spot (please see attached). This however seems to have caused the S_front_inf (yellow outline) to split into two.
Kind regards,
Carl
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
But it did what it was supposed to do, so you must be overwriting it later Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Trolle, Carl Sent: Thursday, September 1, 2022 3:46 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Shift in cortical parcellation, issues with previously suggested solution
Hi,
I believe so, I ran the following commands:
mris_register -L subject/label/?h.central_sulcus.label $FREESURFER_HOME/average/?h.destrieux.simple.2009-07-29.gcs S_central subject/surf/?h.sphere $FREESURFER_HOME/average/?h.average.curvature.filled.buckner40.tif subject/surf/?h.sphere.reg.new
and then: mris_ca_label subject ?h subject/surf/?h.sphere.reg.new $FREESURFER_HOME/average/?h.destrieux.simple.2009-07-29.gcs subject/label/?h.aparc.a2009s.annot.new
Overlaying the new annot-file over the inflated surface with the sulci visible moved the central sulcus to the designated spot (please see attached). This however seems to have caused the S_front_inf (yellow outline) to split into two.
Kind regards,
Carl
freesurfer@nmr.mgh.harvard.edu
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Douglas N. Greve -
Fischl, Bruce -
Trolle, Carl