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Hi Yang

The input to recon-all should be a T1-weighted MRI volume. I think what you are giving it instead is a label volume

Cheers Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Man YANG Sent: Wednesday, June 14, 2023 6:52 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Error: MRInormFindControlPoints: could not find enough control points

External Email - Use Caution Dear Freesurfer experts,

I was trying this command: $ recon-all -s Desikan -i /path/to/nii -all, to generate the anno files.

But it ends up with the errors of MRInormFindControlPoints: could not find enough control points

The .nii file I am using is the volume of Desikan (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1QmJlv1GwEibBBC1yLxvvHNxX-Kpy1Ia9CYNYJfh3u6vbgL...https://secure-web.cisco.com/1oAobD21AB7j6CTjrLH5TvgaAb42Ta0SmXExD6UJ8gzF1YXoix0wGJ0Ho-9kGiXNk8_K8UOOaJRvuX4ciZ5HGYQB1KulXBEyyRzz74TL7hsPmCv3KCrRZ4UPLld69kQRyhR6SsvVKmhzZ0PLuT5gPiqbd0OQW-wZJxuiNFA1lkDf7VaGt5QEqOU5ePNMJK8XAVcOxOEduCVvZMiyaQGyEGBkAxiR6K7mKbJR9oD3_50EheKjowkAAhFfKFpArqq6VJ8IWg9PHpkk5JsgPGnSICJLP_NBEl1zTGIgpptlPRnTITTukrPGWy4egsDAWRrxTCKN3KzhUwrSku4bl5lVUHw/https%3A%2F%2Fneurovault.org%2Fmedia%2Fimages%2F1446%2Faparcaseg.nii.gz)

I’m using FS v7.1.1, macOS Ventura 13.4. Any ideas how I can solve this?

Enclosed please find the recon-all.log

Thank you so much!

Yang