Dear FS experts,
I'm using freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 for my analysis. After recon-all with hippo-subfield, only 45 brain volumes were genreated in aseg.stats file. Freesurfer v.5.1 analysis were able to generate cortical structure's volumes also. Where v.5.2 mainly generated subcortical volumes like caudate. putamen, amygdala and so on.
MAy I knw, is there any way to generate cortical structures also using recon-all command..
Any help 'll be greatly appreciated.
look inthe ?h.aparc.stats files doug
On 08/31/2013 06:33 AM, Anupa AV wrote:
Dear FS experts,
I'm using freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 for my analysis. After recon-all with hippo-subfield, only 45 brain volumes were genreated in aseg.stats file. Freesurfer v.5.1 analysis were able to generate cortical structure's volumes also. Where v.5.2 mainly generated subcortical volumes like caudate. putamen, amygdala and so on.
MAy I knw, is there any way to generate cortical structures also using recon-all command..
Any help 'll be greatly appreciated.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear FS experts,
I'm using freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 for my analysis. After recon-all with hippo-subfield, only 45 brain volumes were genreated in aseg.stats file. Freesurfer v.5.1 analysis were able to generate cortical structure's volumes also. Where v.5.2 mainly generated subcortical volumes like caudate. putamen, amygdala and so on.
MAy I knw, is there any way to generate cortical structures also using recon-all command..
Any help 'll be greatly appreciated.
Hi Anupa
5.2 is a deprecated version and you should definitely upgrade to 5.3. What was your recon-all command line? You probably did generate the cortical stats,and they are in a different file (e.g. aparc.stats).
cheers Bruce On Tue, 3 Sep 2013, Anupa AV wrote:
Dear FS experts,
I'm using freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 for my analysis. After recon-all with hippo-subfield, only 45 brain volumes were genreated in aseg.stats file. Freesurfer v.5.1 analysis were able to generate cortical structure's volumes also. Where v.5.2 mainly generated subcortical volumes like caudate. putamen, amygdala and so on.
MAy I knw, is there any way to generate cortical structures also using recon-all command..
Any help 'll be greatly appreciated.
freesurfer@nmr.mgh.harvard.edu
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Anupa AV -
Bruce Fischl -
Douglas N Greve