Hi - I am attempting to run Qdec on a group of patients vs controls. I have created the mydata.table.dat file with fsid, Group, Age, Gender (and separate files for Group.levels and Gender.levels.
Everything is loading fine but when I press 'analyze' I get an error:
Completed creation of aseg and aparc stats data tables.
ERROR: QdecGlmDesign::Create: zero factors!
Can someone help me find out what I am doing wrong?
Many thanks in advance.
ps I am using the following version: freesurfer-Darwin-lion-stable-pub-v5.3.0
BW
Clare
can you send a pic of the design tab?
On 05/18/2016 12:45 PM, Clare Loane wrote:
Hi - I am attempting to run Qdec on a group of patients vs controls. I have created the mydata.table.dat file with fsid, Group, Age, Gender (and separate files for Group.levels and Gender.levels.
Everything is loading fine but when I press 'analyze' I get an error:
*Completed creation of aseg and aparc stats data tables.*
*ERROR: QdecGlmDesign::Create: zero factors!*
Can someone help me find out what I am doing wrong?
Many thanks in advance.
ps I am using the following version: freesurfer-Darwin-lion-stable-pub-v5.3.0
BW
Clare
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Also, more of the terminal output, not just the error
On 05/18/2016 12:45 PM, Clare Loane wrote:
Hi - I am attempting to run Qdec on a group of patients vs controls. I have created the mydata.table.dat file with fsid, Group, Age, Gender (and separate files for Group.levels and Gender.levels.
Everything is loading fine but when I press 'analyze' I get an error:
*Completed creation of aseg and aparc stats data tables.*
*ERROR: QdecGlmDesign::Create: zero factors!*
Can someone help me find out what I am doing wrong?
Many thanks in advance.
ps I am using the following version: freesurfer-Darwin-lion-stable-pub-v5.3.0
BW
Clare
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug,
Sure. I have attached a screenshot of the design tab as well as the terminal output, mydata.table.dat/Gender.levels/Group.levels files.
Many thanks in advance.
Clare
________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: 18 May 2016 18:03 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] QdecGlmDesign::Create: zero factors!
Also, more of the terminal output, not just the error
On 05/18/2016 12:45 PM, Clare Loane wrote:
Hi - I am attempting to run Qdec on a group of patients vs controls. I have created the mydata.table.dat file with fsid, Group, Age, Gender (and separate files for Group.levels and Gender.levels.
Everything is loading fine but when I press 'analyze' I get an error:
*Completed creation of aseg and aparc stats data tables.*
*ERROR: QdecGlmDesign::Create: zero factors!*
Can someone help me find out what I am doing wrong?
Many thanks in advance.
ps I am using the following version: freesurfer-Darwin-lion-stable-pub-v5.3.0
BW
Clare
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
from the snap shot it does not look like you have selected any factors. Try clicking on and highlighting Group, for example
On 05/19/2016 04:52 AM, Clare Loane wrote:
Hi Doug,
Sure. I have attached a screenshot of the design tab as well as the terminal output, mydata.table.dat/Gender.levels/Group.levels files.
Many thanks in advance.
Clare
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: 18 May 2016 18:03 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] QdecGlmDesign::Create: zero factors!
Also, more of the terminal output, not just the error
On 05/18/2016 12:45 PM, Clare Loane wrote:
Hi - I am attempting to run Qdec on a group of patients vs controls. I have created the mydata.table.dat file with fsid, Group, Age, Gender (and separate files for Group.levels and Gender.levels.
Everything is loading fine but when I press 'analyze' I get an error:
*Completed creation of aseg and aparc stats data tables.*
*ERROR: QdecGlmDesign::Create: zero factors!*
Can someone help me find out what I am doing wrong?
Many thanks in advance.
ps I am using the following version: freesurfer-Darwin-lion-stable-pub-v5.3.0
BW
Clare
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug, Thanks, I have done as you suggested but I am still getting an error. I have attache the terminal output but also paste the error below:
________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: 19 May 2016 16:09 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] QdecGlmDesign::Create: zero factors!
from the snap shot it does not look like you have selected any factors. Try clicking on and highlighting Group, for example
On 05/19/2016 04:52 AM, Clare Loane wrote:
Hi Doug,
Sure. I have attached a screenshot of the design tab as well as the terminal output, mydata.table.dat/Gender.levels/Group.levels files.
Many thanks in advance.
Clare
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: 18 May 2016 18:03 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] QdecGlmDesign::Create: zero factors!
Also, more of the terminal output, not just the error
On 05/18/2016 12:45 PM, Clare Loane wrote:
Hi - I am attempting to run Qdec on a group of patients vs controls. I have created the mydata.table.dat file with fsid, Group, Age, Gender (and separate files for Group.levels and Gender.levels.
Everything is loading fine but when I press 'analyze' I get an error:
*Completed creation of aseg and aparc stats data tables.*
*ERROR: QdecGlmDesign::Create: zero factors!*
Can someone help me find out what I am doing wrong?
Many thanks in advance.
ps I am using the following version: freesurfer-Darwin-lion-stable-pub-v5.3.0
BW
Clare
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug,
Thanks, I have done as you suggested but I am still getting an error. I have attached the terminal output but also paste the error below:
============================================================ Data table loading completed successfully. SUBJECTS_DIR is '/Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec' ERROR: QdecGlmDesign::Create: could not create directory /Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec/qdec/VGKC
BW
Clare
________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: 19 May 2016 16:09 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] QdecGlmDesign::Create: zero factors!
from the snap shot it does not look like you have selected any factors. Try clicking on and highlighting Group, for example
On 05/19/2016 04:52 AM, Clare Loane wrote:
Hi Doug,
Sure. I have attached a screenshot of the design tab as well as the terminal output, mydata.table.dat/Gender.levels/Group.levels files.
Many thanks in advance.
Clare
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: 18 May 2016 18:03 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] QdecGlmDesign::Create: zero factors!
Also, more of the terminal output, not just the error
On 05/18/2016 12:45 PM, Clare Loane wrote:
Hi - I am attempting to run Qdec on a group of patients vs controls. I have created the mydata.table.dat file with fsid, Group, Age, Gender (and separate files for Group.levels and Gender.levels.
Everything is loading fine but when I press 'analyze' I get an error:
*Completed creation of aseg and aparc stats data tables.*
*ERROR: QdecGlmDesign::Create: zero factors!*
Can someone help me find out what I am doing wrong?
Many thanks in advance.
ps I am using the following version: freesurfer-Darwin-lion-stable-pub-v5.3.0
BW
Clare
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
do you have permissions to create a folder in that location? Try it from the terminal to see
On 05/19/2016 11:38 AM, Clare Loane wrote:
Hi Doug,
Thanks, I have done as you suggested but I am still getting an error. I have attached the terminal output but also paste the error below:
============================================================ Data table loading completed successfully. SUBJECTS_DIR is '/Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec' ERROR: QdecGlmDesign::Create: could not create directory /Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec/qdec/VGKC
BW
Clare
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: 19 May 2016 16:09 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] QdecGlmDesign::Create: zero factors!
from the snap shot it does not look like you have selected any factors. Try clicking on and highlighting Group, for example
On 05/19/2016 04:52 AM, Clare Loane wrote:
Hi Doug,
Sure. I have attached a screenshot of the design tab as well as the terminal output, mydata.table.dat/Gender.levels/Group.levels files.
Many thanks in advance.
Clare
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: 18 May 2016 18:03 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] QdecGlmDesign::Create: zero factors!
Also, more of the terminal output, not just the error
On 05/18/2016 12:45 PM, Clare Loane wrote:
Hi - I am attempting to run Qdec on a group of patients vs controls. I have created the mydata.table.dat file with fsid, Group, Age, Gender (and separate files for Group.levels and Gender.levels.
Everything is loading fine but when I press 'analyze' I get an error:
*Completed creation of aseg and aparc stats data tables.*
*ERROR: QdecGlmDesign::Create: zero factors!*
Can someone help me find out what I am doing wrong?
Many thanks in advance.
ps I am using the following version: freesurfer-Darwin-lion-stable-pub-v5.3.0
BW
Clare
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Clare Loane -
Douglas N Greve