Hello,
I have been successfully running the recon-all process on all my subjects and have come to a problem with my last subject. I ran autorecon1 without error but when I ran autorecon2, it exited with errors and I don't know why. I have attached the recon-all log and hope someone could give me some insight into what the problem might be. I haven't changed anything so theoretically this subject should have run smoothly as did the 44 others I did previously.
Any help would be greatly appreciated.
Thank you, Fatima
Is your dusk full?
On Mar 30, 2010, at 3:50 AM, "Ahmed, F, Me fahmed@sun.ac.za" <fahmed@sun.ac.za
wrote:
Hello,
I have been successfully running the recon-all process on all my subjects and have come to a problem with my last subject. I ran autorecon1 without error but when I ran autorecon2, it exited with errors and I don’t know why. I have attached the recon-all log and h ope someone could give me some insight into what the problem might b e. I haven’t changed anything so theoretically this subject should h ave run smoothly as did the 44 others I did previously.
Any help would be greatly appreciated.
Thank you, Fatima
<Autorecon2 Error.docx> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Well I did run out of space in FS a while back, but I made space, and it had been running ok, do you think I have run out of space?
From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: 30 March 2010 14:20 To: Ahmed, F, Me fahmed@sun.ac.za Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] autorecon2 error
Is your dusk full?
On Mar 30, 2010, at 3:50 AM, "Ahmed, F, Me <fahmed@sun.ac.zamailto:fahmed@sun.ac.za>" <fahmed@sun.ac.zamailto:fahmed@sun.ac.za> wrote: Hello,
I have been successfully running the recon-all process on all my subjects and have come to a problem with my last subject. I ran autorecon1 without error but when I ran autorecon2, it exited with errors and I don’t know why. I have attached the recon-all log and hope someone could give me some insight into what the problem might be. I haven’t changed anything so theoretically this subject should have run smoothly as did the 44 others I did previously.
Any help would be greatly appreciated.
Thank you, Fatima
<Autorecon2 Error.docx> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
that is usually what causes that error. If you created more space try rerunning that subject
On Tue, 30 Mar 2010, Ahmed, F, Me fahmed@sun.ac.za wrote:
Well I did run out of space in FS a while back, but I made space, and it had been running ok, do you think I have run out of space?
From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: 30 March 2010 14:20 To: Ahmed, F, Me fahmed@sun.ac.za Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] autorecon2 error
Is your dusk full?
On Mar 30, 2010, at 3:50 AM, "Ahmed, F, Me <fahmed@sun.ac.zamailto:fahmed@sun.ac.za>" <fahmed@sun.ac.zamailto:fahmed@sun.ac.za> wrote: Hello,
I have been successfully running the recon-all process on all my subjects
and have come to a problem with my last subject. I ran autorecon1 without error but when I ran autorecon2, it exited with errors and I donÿÿt know why. I have attached the recon-all log and hope someone could give me some insight into what the problem might be. I havenÿÿt changed anything so theoretically this subject should have run smoothly as did the 44 others I did previously.
Any help would be greatly appreciated.
Thank you, Fatima
<Autorecon2 Error.docx> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thank you, I did create more space and I reran autorecon2 and it completed without error.
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: 30 March 2010 15:23 To: Ahmed, F, Me fahmed@sun.ac.za Cc: Freesurfer Mailing List Subject: RE: [Freesurfer] autorecon2 error
that is usually what causes that error. If you created more space try rerunning that subject
On Tue, 30 Mar 2010, Ahmed, F, Me fahmed@sun.ac.za wrote:
Well I did run out of space in FS a while back, but I made space, and it had been running ok, do you think I have run out of space?
From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: 30 March 2010 14:20 To: Ahmed, F, Me fahmed@sun.ac.za Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] autorecon2 error
Is your dusk full?
On Mar 30, 2010, at 3:50 AM, "Ahmed, F, Me <fahmed@sun.ac.zamailto:fahmed@sun.ac.za>" <fahmed@sun.ac.zamailto:fahmed@sun.ac.za> wrote: Hello,
I have been successfully running the recon-all process on all my subjects
and have come to a problem with my last subject. I ran autorecon1 without error but when I ran autorecon2, it exited with errors and I donÿÿt know why. I have attached the recon-all log and hope someone could give me some insight into what the problem might be. I havenÿÿt changed anything so theoretically this subject should have run smoothly as did the 44 others I did previously.
Any help would be greatly appreciated.
Thank you, Fatima
<Autorecon2 Error.docx> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
great, thanks for letting us know Bruce On Thu, 1 Apr 2010, Ahmed, F, Me fahmed@sun.ac.za wrote:
Thank you, I did create more space and I reran autorecon2 and it completed without error.
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: 30 March 2010 15:23 To: Ahmed, F, Me fahmed@sun.ac.za Cc: Freesurfer Mailing List Subject: RE: [Freesurfer] autorecon2 error
that is usually what causes that error. If you created more space try rerunning that subject
On Tue, 30 Mar 2010, Ahmed, F, Me fahmed@sun.ac.za wrote:
Well I did run out of space in FS a while back, but I made space, and it had been running ok, do you think I have run out of space?
From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: 30 March 2010 14:20 To: Ahmed, F, Me fahmed@sun.ac.za Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] autorecon2 error
Is your dusk full?
On Mar 30, 2010, at 3:50 AM, "Ahmed, F, Me <fahmed@sun.ac.zamailto:fahmed@sun.ac.za>" <fahmed@sun.ac.zamailto:fahmed@sun.ac.za> wrote: Hello,
I have been successfully running the recon-all process on all my subjects
and have come to a problem with my last subject. I ran autorecon1 without error but when I ran autorecon2, it exited with errors and I donÿÿt know why. I have attached the recon-all log and hope someone could give me some insight into what the problem might be. I havenÿÿt changed anything so theoretically this subject should have run smoothly as did the 44 others I did previously.
Any help would be greatly appreciated.
Thank you, Fatima
<Autorecon2 Error.docx> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Ahmed, F, Me <fahmed＠sun.ac.za> -
Bruce Fischl