Dear freesurfers,
I have a subject for which I need to delete some dura in brainmask.mgz and to add some control points. I wonder whether I can do it the following way (to save time):
1. Manually delete extra dura in brainmask.mgz 2. recon-all autoreon1 3. Add control points 4. recon-all -autoreon2-cp -autorecon3
Thank you very much!
Sincerely, Ye
Hi Ye, Is the dura in question affecting the surfaces? If so you can delete the dura, add control points and then run command 4 below. You don't need to rerun autorecon1. -Louis
On Thu, 11 Jul 2013, ye tian wrote:
Dear freesurfers, I have a subject for which I need to delete some dura in brainmask.mgz and to add some control points. I wonder whether I can do it the following way (to save time):
- Manually delete extra dura in brainmask.mgz
- recon-all autoreon1
- Add control points
- recon-all -autoreon2-cp -autorecon3
Thank you very much!
Sincerely, Ye
Dear Louis,
Thank you very much!
Sincerely, Ye
On Thu, Jul 11, 2013 at 4:12 PM, Louis Nicholas Vinke < vinke@nmr.mgh.harvard.edu> wrote:
Hi Ye, Is the dura in question affecting the surfaces? If so you can delete the dura, add control points and then run command 4 below. You don't need to rerun autorecon1. -Louis
On Thu, 11 Jul 2013, ye tian wrote:
Dear freesurfers,
I have a subject for which I need to delete some dura in brainmask.mgz and to add some control points. I wonder whether I can do it the following way (to save time):
- Manually delete extra dura in brainmask.mgz
- recon-all autoreon1
- Add control points
- recon-all -autoreon2-cp -autorecon3
Thank you very much!
Sincerely, Ye
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