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I probably shouldn’t say this, but I will, anyway: It’s coming soon!

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Hi FS Experts again,

Would it be possible to use an MNI Thalamus mask from FSL and possibly register it to my FS brain using FS ? I know it won't be based on the subject anatomy and should probably be smoothed to account for inter subject variability. Would this be vastly inferior to the subject specific way, realising that the subdivisions of theThalamus isn't available yet?

Thanks and regards

Erik

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Erik O'Hanlon erikohanlon@rcsi.ie Sent: 01 June 2018 12:35:55 To: Freesurfer support list Subject: Re: [Freesurfer] creating a mask for the thalamus parcellations

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Thanks Bruce and Eugenio.

it will be great to have so looking forward to it.

Cheers

Erik

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Eugenio e.iglesias@ucl.ac.uk Sent: 31 May 2018 17:53:26 To: Freesurfer support list Subject: Re: [Freesurfer] creating a mask for the thalamus parcellations

External Email - Use Caution

I probably shouldn’t say this, but I will, anyway: It’s coming soon!

-- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC) University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/

On 31/05/2018, 17:46, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of fischl@nmr.mgh.harvard.edu> wrote:

not yet, sorry. We are working on it.... Bruce On Thu, 31 May 2018, Erik O'Hanlon wrote:

> External Email - Use Caution > > Dear FS Experts, > > > Is it possible to use the labels found in the FreesurferColourLUT.txt for the Thalamus parcellations (8001-8014) using the mri_extract_label command? If so, what is the correct input file to use ? > > > mri_extract_label <input file????> 8001 L_Ant_thalamus.mgz > > > Thanks > > > Cheers > > > Erik > > Erik O'Hanlon > Postdoctoral researcher > > [cid:rcsi-crest-signature_f581c185-1d03-45c8-a786-23d8ece3d391.png] > > RCSI Psychiatry > Royal College of Surgeons in Ireland > Beaumont Road, Beaumont D9 Ireland > T: 8093740 > E: erikohanlon@rcsi.ie W: www.rcsi.comhttp://www.rcsi.com/ > > > Transforming Healthcare Education, Research and Service: RCSI Strategic Plan 2018-2022http://www.rcsi.ie/strategy2018 > > > RCSI LEADING THE WORLD TO BETTER HEALTH > > [cid:both3_b9da8717-e91f-4ea7-8729-dc2c4d0a7a5f.png] > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Erik O'Hanlon Postdoctoral researcher

[cid:rcsi-crest-signature_f581c185-1d03-45c8-a786-23d8ece3d391.png]

RCSI Psychiatry Royal College of Surgeons in Ireland Beaumont Road, Beaumont D9 Ireland T: 8093740 E: erikohanlon@rcsi.ie W: www.rcsi.comhttp://www.rcsi.com/

Transforming Healthcare Education, Research and Service: RCSI Strategic Plan 2018-2022http://www.rcsi.ie/strategy2018

RCSI LEADING THE WORLD TO BETTER HEALTH

[cid:both3_b9da8717-e91f-4ea7-8729-dc2c4d0a7a5f.png]

Erik O'Hanlon Postdoctoral researcher

[cid:rcsi-crest-signature_f581c185-1d03-45c8-a786-23d8ece3d391.png]

RCSI Psychiatry Royal College of Surgeons in Ireland Beaumont Road, Beaumont D9 Ireland T: 8093740 E: erikohanlon@rcsi.ie W: www.rcsi.comhttp://www.rcsi.com/

Transforming Healthcare Education, Research and Service: RCSI Strategic Plan 2018-2022http://www.rcsi.ie/strategy2018

RCSI LEADING THE WORLD TO BETTER HEALTH

[cid:both3_b9da8717-e91f-4ea7-8729-dc2c4d0a7a5f.png]