There's a line break after: set dcmlist = (APOE.124.dwi.nii.gz APOE.158.dwi.nii.gz APOE.215.dwi.nii.gz APOE.269.dwi.nii.gz ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Daniel Callow ddcc2442@gmail.com Sent: Monday, October 7, 2019 10:21 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] TRACULA - input Nifti instead of DICOM?

External Email - Use Caution

Hello Anastasia,

I am following up on my previous email about running TRACULA on my subject's NIFTI DWI images instead of dicoms and am running into the following issues which I have had before when trying to use NIFTI files instead of dicoms.

Too many ('s.

ERROR: must specify as many DWI dicoms as subjects

The number of subjects and dwi's listed should all be the same? I have included the dmrirc file to this email as a reference. Any ideas what could be leading to this issue? Is it the way I am naming or referencing the DWI images?

Best,

Daniel Callow PhD Student, Neuroscience and Cognitive Science Exercise for Brain Health Lab University of Maryland, College Park ddcc2442@gmail.commailto:ddcc2442@gmail.com 443-254-6298