Hi Anastasia:
One of my brains had a problem when doing trac-all -path analysis. Please see below the complete pathway. Thanks so much for your help.
Alan
csh::alanf@cerebro[/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons] : trac-all -path -c /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/dmrirc-104 INFO: SUBJECTS_DIR is /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons INFO: Diffusion root is /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/ Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/stable5_3_0 trac-paths -c /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/scripts/dmrirc.local -log /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/scripts/trac-all.log -cmd /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/scripts/trac-all.cmd #------------------------------------- /usr/local/freesurfer/stable5_3_0//bin/trac-paths #------------------------------------- #@# Path reconstruction Wed Aug 14 13:36:21 EDT 2013 rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fmajor_PP_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fminor_PP_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slft_PP_avg33_mni_bbr /usr/local/freesurfer/stable5_3_0//bin/dmri_paths --outdir /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cst_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cst_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.unc_AS_avg33_mni_bbr 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/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvecs --bval /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvals --mask /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz 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/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz 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/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all 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/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt
cwd /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons cmdline /usr/local/freesurfer/stable5_3_0//bin/dmri_paths --outdir /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cst_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cst_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.unc_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.unc_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ilf_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ilf_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fmajor_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fminor_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.atr_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.atr_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ccg_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ccg_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cab_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cab_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slfp_PP_avg33_mni_bbr 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/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz 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/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt
sysname Linux hostname cerebro machine x86_64 user alanf Output directory: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cst_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cst_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.unc_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.unc_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ilf_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ilf_AS_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fmajor_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fminor_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.atr_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.atr_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ccg_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ccg_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cab_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cab_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slfp_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slfp_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slft_PP_avg33_mni_bbr /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/dwi.nii.gz Gradients: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvecs B-values: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvals Mask: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/dwi.nii.gz Loading mask from /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri.bedpostX Loading b-values from /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvals Loading gradients from /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvecs INFO: Found 10 baseline images (b = 0) out of a total of 70 frames INFO: Found 182362 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz niiRead(): error opening file /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz ERROR: Could not read /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Linux cerebro 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
trac-paths exited with ERRORS at Wed Aug 14 13:37:20 EDT 2013
Alan - As I asked before, please attach the entire file scripts/trac-all.log. Add it to your messaage as a file attachment, don't paste any of it in the message. Is this clear?
a.y
On Wed, 14 Aug 2013, Alan Francis wrote:
Hi Anastasia:
One of my brains had a problem when doing trac-all -path analysis. Please see below the complete pathway. Thanks so much for your help.
Alan
csh::alanf@cerebro [/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons] : trac-all -path -c /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/dmrirc-104 INFO: SUBJECTS_DIR is /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons INFO: Diffusion root is /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/ Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/stable5_3_0 trac-paths -c /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/scripts/dmrirc.local -log /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/scripts/trac-all.log -cmd /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/scripts/trac-all.cmd #------------------------------------- /usr/local/freesurfer/stable5_3_0//bin/trac-paths #------------------------------------- #@# Path reconstruction Wed Aug 14 13:36:21 EDT 2013 rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cst_AS_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cst_AS_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.unc_AS_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.unc_AS_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ilf_AS_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ilf_AS_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fmajor_PP_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fminor_PP_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.atr_PP_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.atr_PP_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ccg_PP_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ccg_PP_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cab_PP_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cab_PP_avg33_mni_bb r rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slfp_PP_avg33_mni_b br rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slfp_PP_avg33_mni_b br rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slft_PP_avg33_mni_b br rm -rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slft_PP_avg33_mni_b br /usr/local/freesurfer/stable5_3_0//bin/dmri_paths --outdir/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cst_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cst_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.unc_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.unc_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ilf_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ilf_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fmajor_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fminor_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.atr_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.atr_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ccg_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ccg_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cab_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cab_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slfp_PP_avg33_mni_b br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slfp_PP_avg33_mni_b br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slft_PP_avg33_mni_b br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slft_PP_avg33_mni_b br --dwi /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/dwi.nii.gz --grad /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvecs --bval /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvals --mask/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/aparc+aseg_mask. bbr.nii.gz --bpdir /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.unc_AS_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.unc_AS_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ilf_AS_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_ mni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_ mni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_ mni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_ mni_bbr_end1_dil.nii.gz --roi2/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.unc_AS_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.unc_AS_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ilf_AS_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_ mni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_ mni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_ mni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_ mni_bbr_end2_dil.nii.gz --reg /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/xfms/diff2mni.bbr.mat --init/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cst_AS_avg33_ mni_bbr_cpts_6.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.cst_AS_avg33_ mni_bbr_cpts_6.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.unc_AS_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.unc_AS_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.ilf_AS_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.ilf_AS_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/fmajor_PP_avg33_ mni_bbr_cpts_7.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/fminor_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.atr_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.atr_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.ccg_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.ccg_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cab_PP_avg33_ mni_bbr_cpts_4.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.cab_PP_avg33_ mni_bbr_cpts_4.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.slfp_PP_avg33 _mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.slfp_PP_avg33 _mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.slft_PP_avg33 _mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.slft_PP_avg33 _mni_bbr_cpts_5.txt --nprior/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.unc_AS_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.unc_AS_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.unc_AS_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.unc_AS_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ilf_AS_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ilf_AS_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_ mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_ mni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_ mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_ mni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_ mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_ mni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_ mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_ mni_bbr_fsnnids_all --lprior/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.unc_AS_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.unc_AS_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.unc_AS_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.unc_AS_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ilf_AS_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ilf_AS_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_ mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_ mni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_ mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_ mni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_ mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_ mni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_ mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_ mni_bbr_fsids_all --seg/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cst_AS_avg33_ mni_bbr_cpts_6_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.cst_AS_avg33_ mni_bbr_cpts_6_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.unc_AS_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.unc_AS_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.ilf_AS_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.ilf_AS_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/fmajor_PP_avg33_ mni_bbr_cpts_7_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/fminor_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.atr_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.atr_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.ccg_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.ccg_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cab_PP_avg33_ mni_bbr_cpts_4_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.cab_PP_avg33_ mni_bbr_cpts_4_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.slfp_PP_avg33 _mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.slfp_PP_avg33 _mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.slft_PP_avg33 _mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.slft_PP_avg33 _mni_bbr_cpts_5_std.txt
cwd /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons cmdline /usr/local/freesurfer/stable5_3_0//bin/dmri_paths --outdir/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cst_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cst_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.unc_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.unc_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ilf_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ilf_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fmajor_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fminor_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.atr_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.atr_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ccg_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ccg_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cab_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cab_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slfp_PP_avg33_mni_b br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slfp_PP_avg33_mni_b br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slft_PP_avg33_mni_b br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slft_PP_avg33_mni_b br --dwi /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/dwi.nii.gz --grad /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvecs --bval /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvals --mask/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/aparc+aseg_mask. bbr.nii.gz --bpdir /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.unc_AS_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.unc_AS_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ilf_AS_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_ mni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_ mni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_ mni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_ mni_bbr_end1_dil.nii.gz --roi2/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.unc_AS_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.unc_AS_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ilf_AS_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_ mni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_ mni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_ mni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_ mni_bbr_end2_dil.nii.gz --reg /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/xfms/diff2mni.bbr.mat --init/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cst_AS_avg33_ mni_bbr_cpts_6.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.cst_AS_avg33_ mni_bbr_cpts_6.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.unc_AS_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.unc_AS_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.ilf_AS_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.ilf_AS_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/fmajor_PP_avg33_ mni_bbr_cpts_7.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/fminor_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.atr_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.atr_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.ccg_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.ccg_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cab_PP_avg33_ mni_bbr_cpts_4.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.cab_PP_avg33_ mni_bbr_cpts_4.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.slfp_PP_avg33 _mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.slfp_PP_avg33 _mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.slft_PP_avg33 _mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.slft_PP_avg33 _mni_bbr_cpts_5.txt --nprior/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cst_AS_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.unc_AS_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.unc_AS_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.unc_AS_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.unc_AS_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ilf_AS_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ilf_AS_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ilf_AS_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fmajor_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/fminor_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.atr_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.atr_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.ccg_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.ccg_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cab_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.cab_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_ mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slfp_PP_avg33_ mni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_ mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slfp_PP_avg33_ mni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_ mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.slft_PP_avg33_ mni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_ mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_ mni_bbr_fsnnids_all 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mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/rh.slft_PP_avg33_ mni_bbr_fsids_all --seg/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cst_AS_avg33_ mni_bbr_cpts_6_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.cst_AS_avg33_ mni_bbr_cpts_6_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.unc_AS_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.unc_AS_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.ilf_AS_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.ilf_AS_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/fmajor_PP_avg33_ mni_bbr_cpts_7_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/fminor_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.atr_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.atr_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.ccg_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.ccg_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cab_PP_avg33_ mni_bbr_cpts_4_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.cab_PP_avg33_ mni_bbr_cpts_4_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.slfp_PP_avg33 _mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.slfp_PP_avg33 _mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.slft_PP_avg33 _mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/rh.slft_PP_avg33 _mni_bbr_cpts_5_std.txt sysname Linux hostname cerebro machine x86_64 user alanf Output directory:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cst_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cst_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.unc_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.unc_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ilf_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ilf_AS_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fmajor_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fminor_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.atr_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.atr_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ccg_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ccg_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cab_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cab_PP_avg33_mni_bb r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slfp_PP_avg33_mni_b br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slfp_PP_avg33_mni_b br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slft_PP_avg33_mni_b br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slft_PP_avg33_mni_b br DWIs: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/dwi.nii.gz Gradients: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvecs B-values: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvals Mask:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/aparc+aseg_mask. bbr.nii.gz BEDPOST directory: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point 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ni_bbr_cpts_4.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.slfp_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.slfp_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.slft_PP_avg33_ mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.slft_PP_avg33_ mni_bbr_cpts_5.txt End ROI 1:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cst_AS_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.unc_AS_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.unc_AS_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ilf_AS_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ilf_AS_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fmajor_PP_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fminor_PP_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.atr_PP_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.atr_PP_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ccg_PP_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ccg_PP_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cab_PP_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cab_PP_avg33_mn i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slfp_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slfp_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slft_PP_avg33_m ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slft_PP_avg33_m ni_bbr_end1_dil.nii.gz End ROI 2:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cst_AS_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.unc_AS_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.unc_AS_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ilf_AS_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ilf_AS_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fmajor_PP_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fminor_PP_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.atr_PP_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.atr_PP_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ccg_PP_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ccg_PP_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cab_PP_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cab_PP_avg33_mn i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slfp_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slfp_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slft_PP_avg33_m ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slft_PP_avg33_m ni_bbr_end2_dil.nii.gz Neighbor aseg prior:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cst_AS_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.unc_AS_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.unc_AS_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ilf_AS_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ilf_AS_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fmajor_PP_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fminor_PP_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.atr_PP_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.atr_PP_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ccg_PP_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ccg_PP_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cab_PP_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cab_PP_avg33_mn i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slfp_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slfp_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slft_PP_avg33_m ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slft_PP_avg33_m ni_bbr_fsnnprior_all Neighbor aseg label ID list:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cst_AS_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.unc_AS_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.unc_AS_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ilf_AS_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ilf_AS_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fmajor_PP_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fminor_PP_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.atr_PP_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.atr_PP_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ccg_PP_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ccg_PP_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cab_PP_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cab_PP_avg33_mn i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slfp_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slfp_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slft_PP_avg33_m ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slft_PP_avg33_m ni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mn 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i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.atr_PP_avg33_mn i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.atr_PP_avg33_mn i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ccg_PP_avg33_mn i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ccg_PP_avg33_mn i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cab_PP_avg33_mn i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cab_PP_avg33_mn i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slfp_PP_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slfp_PP_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slft_PP_avg33_m ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slft_PP_avg33_m ni_bbr_fsprior_all Local aseg label ID list:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cst_AS_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.unc_AS_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.unc_AS_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ilf_AS_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ilf_AS_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fmajor_PP_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fminor_PP_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.atr_PP_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.atr_PP_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.ccg_PP_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.ccg_PP_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cab_PP_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.cab_PP_avg33_mn i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slfp_PP_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slfp_PP_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.slft_PP_avg33_m ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh.slft_PP_avg33_m ni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.cst_AS_avg33_m ni_bbr_cpts_6_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.cst_AS_avg33_m ni_bbr_cpts_6_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.unc_AS_avg33_m ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.unc_AS_avg33_m ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.ilf_AS_avg33_m ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.ilf_AS_avg33_m ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/fmajor_PP_avg33_m ni_bbr_cpts_7_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/fminor_PP_avg33_m ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.atr_PP_avg33_m ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.atr_PP_avg33_m ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.ccg_PP_avg33_m ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.ccg_PP_avg33_m ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.cab_PP_avg33_m ni_bbr_cpts_4_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.cab_PP_avg33_m ni_bbr_cpts_4_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.slfp_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.slfp_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.slft_PP_avg33_ mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/rh.slft_PP_avg33_ mni_bbr_cpts_5_std.txt Loading DWIs from /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/dwi.nii.gz Loading mask from/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/aparc+aseg_mask. bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri.bedpostX Loading b-values from /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvals Loading gradients from /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvecs INFO: Found 10 baseline images (b = 0) out of a total of 70 frames INFO: Found 182362 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mn i_bbr_end1_dil.nii.gz niiRead(): error opening file/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mn i_bbr_end1_dil.nii.gz ERROR: Could not read/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_mn i_bbr_end1_dil.nii.gz Linux cerebro 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
trac-paths exited with ERRORS at Wed Aug 14 13:37:20 EDT 2013
freesurfer@nmr.mgh.harvard.edu
-
Alan Francis -
Anastasia Yendiki