what version was the table generated with? 5.3 does not use ICV in the table anymore. It uses eTIV. Can you send an example of one of your tables?

On 10/07/2013 03:12 AM, Daniel Ferreira wrote:

Dear Douglas and Martin,

Thanks for your replies.

So far I have always been able to get eTIV when running asegstats2table (last column on the spreadsheet). But my current FreeSurfer version (5.3.0) is not grabbing it.

I can found eTIV in the header and extract it for all the subjects with mri_segstats (as below in blue), but output is quite messy. I would rather prefer to get it as in asegstats2table format.

Any idea?

Thanks a lot,

Dani

for i in FAD*; do echo $i; mri_segstats --subject $i --etiv-only >> table_eTIV; done

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